Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04132 ATGGACCCAACCTCCTTCGATCTCCCTCCACCACCACCCACCACCGTCCCCTTCTCCCTCGAACCCACCTTCACCTCCTCCGTCAGTCACCCTCCCTACGCTGAGATGATATACAAAGCAATAGAATCCCTCAAAGAGAAAGACGGTTCAAGCAAAAGAGCCATAGCAAAATTCATAGAACAAAACTACGCCAACGTTCTTCCACAACAACACACCGCTTTGTTAACTCAACATCTCAACCACTTGAAATCTGCCGGTCTTCTCGTCACCGTTAAAAAATCTTACAAACTACCTTCCTCGCTCCCTCCACCTCCCACCGTCACTAGATCTGACTCCGAATCTCATCTCCCTTTCACTCCATTATCCCAAAAACCCCGTGGCCGTCCCGCTAAGCCCAAGCCCGAACTCAACTCCCAGCCCGTCTTCGCATCGTTTGAATTTGACCCTCCTACTCACGACGACCCTGTACCCGTCGACCTCACTCAAACCCCCACGACTCTATCTACCAAAAGAGGTCGCGGTCGTCCGCCTGGGAGCTTCAGATCTAAGTCGCTCAAGAGCGCTAGCCGTCCTCCGAAGCCCAAATCTGTGTCTAACGGGCTTAAACGGCGTGGCCGTCCTCCCAAAAGCCATTCTCAACCGACGGTTATACCTTTTTCAGCTCCTGCTGCCGTGACAGATGGGACAGATGGGGTTACTGTACCTGTTGTTAGATCTACCAGGCCAAGAGGCAGGCCTAAGAAGTATGCTGATGAGTTGATGTCAGTTGCTCCCACCATGAGGCAGGGTCGTCCTGCTAAGCTTGCTGTCATCGGTGGGCCTAAGAATCCCTTCCGGAGGCCCGTCGGCCGTCCAAAGGGAGCAAAAGGAGTAAAAAAGTATGCTGATGAAGATCTAAGAAAGAAACTTGAGCACTTTCAATCAAAGGTTAAGGAATCTCTCGAAGTGCTTAAGCCTTATTTTGATCATCAAAGTCCAGTCAATGCAGTTGCAGCAATTCAAGAATTGGAAAACCTGGCAACTCTGGACCTTAAAGCACCATTAAGAGATGAAACACAGCAACATCAACCAGAGCAGTTTCCGGAAGAGCCACAGCCGCAACAACAGCTACTGCCTCAGCAACTGGTTCCGCCACAGCAACTGCCACCGGTGCAGCAGATTTATGAACAGCAGTATCTCCAGATACCATTGCAACAACAGATTCAGCAACTTTTTCAGCCACACAATTTAGCTTCAAGCTAG 1242 0.5024 MDPTSFDLPPPPPTTVPFSLEPTFTSSVSHPPYAEMIYKAIESLKEKDGSSKRAIAKFIEQNYANVLPQQHTALLTQHLNHLKSAGLLVTVKKSYKLPSSLPPPPTVTRSDSESHLPFTPLSQKPRGRPAKPKPELNSQPVFASFEFDPPTHDDPVPVDLTQTPTTLSTKRGRGRPPGSFRSKSLKSASRPPKPKSVSNGLKRRGRPPKSHSQPTVIPFSAPAAVTDGTDGVTVPVVRSTRPRGRPKKYADELMSVAPTMRQGRPAKLAVIGGPKNPFRRPVGRPKGAKGVKKYADEDLRKKLEHFQSKVKESLEVLKPYFDHQSPVNAVAAIQELENLATLDLKAPLRDETQQHQPEQFPEEPQPQQQLLPQQLVPPQQLPPVQQIYEQQYLQIPLQQQIQQLFQPHNLASS 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04132 413 MobiDBLite consensus disorder prediction 158 172 - -
Vifa6g04132 413 SUPERFAMILY "Winged helix" DNA-binding domain 26 107 IPR036390 -
Vifa6g04132 413 MobiDBLite consensus disorder prediction 97 246 - -
Vifa6g04132 413 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 29 99 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa6g04132 413 SMART AT_hook_2 279 291 IPR017956 GO:0003677
Vifa6g04132 413 SMART AT_hook_2 170 182 IPR017956 GO:0003677
Vifa6g04132 413 SMART AT_hook_2 240 252 IPR017956 GO:0003677
Vifa6g04132 413 SMART AT_hook_2 201 213 IPR017956 GO:0003677
Vifa6g04132 413 SMART AT_hook_2 123 135 IPR017956 GO:0003677
Vifa6g04132 413 MobiDBLite consensus disorder prediction 268 293 - -
Vifa6g04132 413 MobiDBLite consensus disorder prediction 358 376 - -
Vifa6g04132 413 Pfam linker histone H1 and H5 family 30 93 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa6g04132 413 CDD H15 27 94 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa6g04132 413 PRINTS AT-hook-like domain signature 123 133 IPR017956 GO:0003677
Vifa6g04132 413 PRINTS AT-hook-like domain signature 238 248 IPR017956 GO:0003677
Vifa6g04132 413 PRINTS AT-hook-like domain signature 168 179 IPR017956 GO:0003677
Vifa6g04132 413 SMART h15plus2 27 94 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa6g04132 413 PANTHER HISTONE H1 16 248 - -
Vifa6g04132 413 Gene3D - 26 110 IPR036388 -
Vifa6g04132 413 FunFam Histone H1.2 26 107 - -
Vifa6g04132 413 MobiDBLite consensus disorder prediction 344 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04132 Vifa-Chr6 1360596525 1360598370 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g04132 36 102 Single Myb Histone (SMH) Gene Family AT1G49950 40.299 1.13e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g04132 - - psat:127100408 563.918