Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04131 ATGGGTGGCGGAGGAACGATCGGCGAAGGGCTTCGTCGTTTGTTTCAACGACGATCTACTACTACCACTAAGCACCACCACCGCAATGATGACGACGACGACGACAACCGCGTCTCCGTGAAAGATTTACGCTCACAGCTGGCAATTATTCCAACCACTAACGATCACGATCACAGTCCTCCTCCTACTAAGTCACCATCCCTCTTCAACATCAAAGTTCCCGTTCAACCTCTCTTCCTTCCTTCTTCCATGGATCCAAACAAAAAGGCTGCGCCGGAGACTGAGTTTTTTACTGAGTATGGCGAGGCAAGTCAATATCAGGTCCAAGAAATTATTGGAAAAGGAAGTTATGGTGTTGTCTGCTCTGCGATTGATATTCATACTGGCCAGAAAGTTGCAATCAAGAAAATTCATGATGTTTTCGACCATGTATCAGATGCTACAAGGATCCTTAGAGAGATTAAGCTCTTGCGCTTGCTTAGACATCCTGATATTGTAGAAATTAGGCATATTATGCTTCCTCCTTCGCGCAGGGAGTTCAAGGATGTTTATGTTGTCTTCGAGTTGATGGAATCTGATCTACATCAAGTCATTAAGGCAAATGATGATCTTACGCCTCACCACCATCAATTTTTCTTGTACCAGCTTCTTCGGGGCCTCAAATTTATACATACAGCTAATGTGTTTCACCGTGATTTGAAGCCTAAAAACATTCTTGCTAATGCTGATTGCAAACTCAAGATATGCGATTTTGGACTTGCCCGAGTCTCATTTAATGATGCTCCGTCTGCTATCTTCTGGACAGACTATGTTGCAACTAGGTGGTACCGTGCACCTGAGCTATGCGGTTCTTTTTTCTCAAAATATACCCCTGGAATTGATATTTGGAGCATTGGATGCATATTTGCAGAAATGCTTATTGGGAGGCCATTATTTCCTGGAAAAAATGTGGTGCACCAATTGGATCTCATGACTGATTTGCTCGGTACTCCTCCTCCCGAGTCCATTGCGAGAATTCGAAATGAGAAAGCTAGAAGGTATCTTAATAGCATGCGAAAAAAGCATCCTGTTCCACTCTCCCAGAAATTTCCAAATATAGATCCTTTGGCTCTACGTATACTGGAGCGTTTACTTGCATTTGATCCTAAAAATCGTCCATCAGCTGAAGAGGCTTTGTCTGATCCTTATTTCCATGGCTTATCAAACATCGATCGCGAACCATCCACTCACCCCATTTCAAAACTTGAGTTTGAATTCGAGAGGAGGAAATTGACTAAAGATGATGTCAGAGAGTTGATTTATCGAGAGATTTTGGAGTATCATCCCCAGATGCTTGAGGAATATCTTAGTGGTGGAGATCAAACCAGCTTCATGTATCCAAGTGGGGTTGATCGATTCAAGCGACAGTTTGCACATCTTGAGGAACATTATGGCAATGGCAAAGGCAAAGGCGAACGAAGCTCACCATTGCAGAGACAACATGCCTCCTTACCCAGAGAACGAGTTCATACTTCCAAGAATGAAAATAATGAAAACAACGATATTGAAATGCCGACTCAGACTGGACCAAATCTTCAGAGTCCACGTAGCTTGTTGAAGAGTGCCAGCATTAGTGCTTCAAAGTGTATAGATGTGAAAAGAAGTAAAGATCCAGAGGAACCAATTATAGAGGACAATGACGTCGCAGCAGACGAATTGACAGATAACATGGCTGCCCTGCATGCTTAA 1728 0.4311 MGGGGTIGEGLRRLFQRRSTTTTKHHHRNDDDDDDNRVSVKDLRSQLAIIPTTNDHDHSPPPTKSPSLFNIKVPVQPLFLPSSMDPNKKAAPETEFFTEYGEASQYQVQEIIGKGSYGVVCSAIDIHTGQKVAIKKIHDVFDHVSDATRILREIKLLRLLRHPDIVEIRHIMLPPSRREFKDVYVVFELMESDLHQVIKANDDLTPHHHQFFLYQLLRGLKFIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPGIDIWSIGCIFAEMLIGRPLFPGKNVVHQLDLMTDLLGTPPPESIARIRNEKARRYLNSMRKKHPVPLSQKFPNIDPLALRILERLLAFDPKNRPSAEEALSDPYFHGLSNIDREPSTHPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLEEYLSGGDQTSFMYPSGVDRFKRQFAHLEEHYGNGKGKGERSSPLQRQHASLPRERVHTSKNENNENNDIEMPTQTGPNLQSPRSLLKSASISASKCIDVKRSKDPEEPIIEDNDVAADELTDNMAALHA 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04131 575 ProSitePatterns Protein kinases ATP-binding region signature. 112 136 IPR017441 GO:0005524
Vifa6g04131 575 ProSiteProfiles Protein kinase domain profile. 106 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g04131 575 MobiDBLite consensus disorder prediction 49 68 - -
Vifa6g04131 575 ProSitePatterns EF-hand calcium-binding domain. 31 43 IPR018247 -
Vifa6g04131 575 SUPERFAMILY Protein kinase-like (PK-like) 102 402 IPR011009 -
Vifa6g04131 575 MobiDBLite consensus disorder prediction 24 38 - -
Vifa6g04131 575 FunFam Mitogen-activated protein kinase 421 443 - -
Vifa6g04131 575 MobiDBLite consensus disorder prediction 477 533 - -
Vifa6g04131 575 FunFam Mitogen-activated protein kinase 192 420 - -
Vifa6g04131 575 Gene3D Transferase(Phosphotransferase) domain 1 192 420 - -
Vifa6g04131 575 MobiDBLite consensus disorder prediction 496 510 - -
Vifa6g04131 575 FunFam Mitogen-activated protein kinase 95 200 - -
Vifa6g04131 575 ProSitePatterns MAP kinase signature. 141 244 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vifa6g04131 575 MobiDBLite consensus disorder prediction 511 533 - -
Vifa6g04131 575 Gene3D Phosphorylase Kinase; domain 1 121 443 - -
Vifa6g04131 575 MobiDBLite consensus disorder prediction 19 38 - -
Vifa6g04131 575 SMART serkin_6 106 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g04131 575 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 105 447 - -
Vifa6g04131 575 CDD STKc_TDY_MAPK 105 442 - -
Vifa6g04131 575 Pfam Protein kinase domain 106 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04131 Vifa-Chr6 1360029002 1360036898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g04131 1 574 MAP Kinase Gene Family AT1G73670 67.780 0.0 794
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vifa6g04131 Pkinase 7.2e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g04131 - - gmx:100780831 878.626