Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04123 ATGGACAAAACTACACCCAAGTACTCAAAGAGTAGGTATGATGAAATTGTGAAGAAAGTTTCATCCTACATGAAGAAGGTTGGCTATAGCCCAGATAAAATTCCATTTGTTTCCATCTCTGGTTTTGAGGGAGATAACATGATTGAGCGCTCTACAAATCTTGACTGGCACAAGGGTCCAACTGTTCTTGATGCTCTTGACGCAATCACTAAGCCAAAGAGGCCATCAGACAAGCCCATTCGATTACCACTTCAGGGTGTTTACAAGATGGGAGGAATTGGAATTGTGCCTGTGGGACATGTTGAGACTGGTATCATTAAACCTGGAATGGTGGTGACTTTTGCGCCAACTGGACTTCAAAGTGAAGTTAACTCTGTGGAGATGCATCATGAAGCTCCCGCTAAGGCCTTTCCCAGTGACAATGTCGAATTTAATGTTAAGAAGTTGCTGTCAATGATCTCAAGCTCAAGATAA 474 0.4262 MDKTTPKYSKSRYDEIVKKVSSYMKKVGYSPDKIPFVSISGFEGDNMIERSTNLDWHKGPTVLDALDAITKPKRPSDKPIRLPLQGVYKMGGIGIVPVGHVETGIIKPGMVVTFAPTGLQSEVNSVEMHHEAPAKAFPSDNVEFNVKKLLSMISSSR 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04123 157 Gene3D Translation factors 75 153 - -
Vifa6g04123 157 Gene3D - 1 72 IPR027417 -
Vifa6g04123 157 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 94 IPR027417 -
Vifa6g04123 157 FunFam Elongation factor 1-alpha 75 153 - -
Vifa6g04123 157 CDD EF1_alpha_II 76 147 - -
Vifa6g04123 157 SUPERFAMILY Translation proteins 72 147 IPR009000 -
Vifa6g04123 157 PANTHER TRANSLATION FACTOR 1 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04123 Vifa-Chr6 1358513086 1358513559 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g04123 1 149 Eukaryotic Initiation Factors Gene Family AT5G60390 79.195 3.14e-84 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g04123 K03231 - csin:114279885 254.988