Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04117 ATGGATATCGAAGATGACATTCGATCTTTACAGCTTGACTCAGCAGCAGAAGATGTTAACGGGGTGGTAAATCCAGAAGATGAGAAGCCAGATGTTGATGATTTAGATAAGATGGATGAAGATCCTAAGCAGGAGGTTCAGGTTGAGGCTGTTGAGGCCGAGCCAAAAGATAAGGAAATTCATGCTGTTGAGGCTGAGCCTAAAGCAAAAGATAAGGAAATTCCTCCTGTTCAAGTTGAAGAAGTTGAGCAGATGGAGAAAAGGCACTTGAATGTTGTGTTTATTGGGCATGTTGACGCTGGCAAGTCTACAACTGGAGGCCAGATACTTTTCCTCAGTGGTCAGGTTGATGATCGAACTATCCAAAAATATGAGAAAGAAGCTAAGGACAAAAGTAGAGAAAGCTGGTACATGGCTTATATTATGGACACAAATGAGGAGGAGAGAGCAAAGGGAAAGACAGTTGAAGTTGGAAGAGCACACTTTGAGACAGAGACAACGAGGTTCACCATTTTGGATGCACCTGGCCACAAGAGCTATGTTCCTAATATGATTAGTGGTGCATCTCAAGCTGACATTGGAGTGTTGGTAATTTCTGCCCGGAAGGGAGAGTTTGAAACTGGATTTGAGAGAGGTGGACAAACTCGTGAACATGTCCAGCTTGCCAAAACATTGGGTGTAACTAAGCTGCTTGTGGTTGTCAATAAAATGGATGATCCTACAGTAAACTGGGAAAAAGAAAGGTATGATGAAATCGAGTTAAAGGTGATTCCATTTCTAAAGCAATCAGGATACAATGTAAAGAAAGATGTCTCATTTTTACCAATATCGGGGCTCATGGGTTTTAACTTAAAAACTAGAATGGATAAAAGCACTTGTTCATGGTGGGACGGGCCTTGCTTATTTGAAGCCCTTGATAGTATCGATGTTCCTATGGGAGATCCCAAAAATCCTTTCAGGATGCCTATAATTGACAAGTTCAAAGACATGGGAACTGTTGCTATGGGCAAAGTTGAATCTGGGACTATTCGGGAGGGAGATTCCCTTTTCGTTATGCCTAATAAGGATCAAGTTAAAGTTGTTGCTGTATATATTGATGAAAATCGGGTAAAACGTGCCGGACCTGGTGAAAATTTACGGGTTCGATTATCTGGTGTTGAAGAAGAAGACATATCAGCTGGGTTCGTCCTTTGTAGTGTTGCAAATCCAATACCAGCAGTTACCGAGTTTGTTGCACAGTTGGCAATACTTGAATTATTGGACAATGCTATTTTTACTGCTGGATACAAGGCTGTTCTGCACGTCCACTCTGTAGTTGAGGAATGTGAGATTGTTGAACTATTGCACCAAATTGACCCAAAGACAAGGAAGCCTTTGAAAAAGAAAATTCTCTTTGTAAAGAACGGTGCTGTTGTATTATGCCGTGTTCAGGTTGGTAGCTTGATATGCATTGAGAAGTTCTCTGATTATCCACAACTAGGGAGGTTCACTCTTCGCACTGAAGGAAAAACTGTTGCTGTGGGAAAAATCACTGCTATGTGA 1542 0.415 MDIEDDIRSLQLDSAAEDVNGVVNPEDEKPDVDDLDKMDEDPKQEVQVEAVEAEPKDKEIHAVEAEPKAKDKEIPPVQVEEVEQMEKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERAKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFERGGQTREHVQLAKTLGVTKLLVVVNKMDDPTVNWEKERYDEIELKVIPFLKQSGYNVKKDVSFLPISGLMGFNLKTRMDKSTCSWWDGPCLFEALDSIDVPMGDPKNPFRMPIIDKFKDMGTVAMGKVESGTIREGDSLFVMPNKDQVKVVAVYIDENRVKRAGPGENLRVRLSGVEEEDISAGFVLCSVANPIPAVTEFVAQLAILELLDNAIFTAGYKAVLHVHSVVEECEIVELLHQIDPKTRKPLKKKILFVKNGAVVLCRVQVGSLICIEKFSDYPQLGRFTLRTEGKTVAVGKITAM 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04117 513 PANTHER TRANSLATION FACTOR 80 512 - -
Vifa6g04117 513 MobiDBLite consensus disorder prediction 1 42 - -
Vifa6g04117 513 Gene3D Translation factors 406 513 - -
Vifa6g04117 513 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 408 512 IPR009001 -
Vifa6g04117 513 FunFam Putative translation elongation/initiation factor family protein 405 513 - -
Vifa6g04117 513 Pfam Elongation factor Tu domain 2 331 398 IPR004161 GO:0005525
Vifa6g04117 513 SUPERFAMILY Translation proteins 311 403 IPR009000 -
Vifa6g04117 513 Pfam Elongation factor Tu C-terminal domain 404 512 IPR004160 -
Vifa6g04117 513 Pfam Elongation factor Tu GTP binding domain 87 289 IPR000795 GO:0003924|GO:0005525
Vifa6g04117 513 PRINTS GTP-binding elongation factor signature 186 197 IPR000795 GO:0003924|GO:0005525
Vifa6g04117 513 PRINTS GTP-binding elongation factor signature 150 158 IPR000795 GO:0003924|GO:0005525
Vifa6g04117 513 PRINTS GTP-binding elongation factor signature 230 239 IPR000795 GO:0003924|GO:0005525
Vifa6g04117 513 PRINTS GTP-binding elongation factor signature 170 180 IPR000795 GO:0003924|GO:0005525
Vifa6g04117 513 PRINTS GTP-binding elongation factor signature 91 104 IPR000795 GO:0003924|GO:0005525
Vifa6g04117 513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 73 322 IPR027417 -
Vifa6g04117 513 CDD eRF3_C_III 405 511 - -
Vifa6g04117 513 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 87 316 IPR000795 GO:0003924|GO:0005525
Vifa6g04117 513 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 143 158 IPR031157 -
Vifa6g04117 513 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 315 401 - -
Vifa6g04117 513 CDD eRF3_II 318 399 - -
Vifa6g04117 513 Gene3D - 69 311 IPR027417 -
Vifa6g04117 513 Gene3D Translation factors 316 401 - -
Vifa6g04117 513 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 65 311 - -
Vifa6g04117 513 CDD EF1_alpha 91 311 - -
Vifa6g04117 513 MobiDBLite consensus disorder prediction 22 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04117 Vifa-Chr6 1353627248 1353635640 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g04117 86 513 Eukaryotic Initiation Factors Gene Family AT5G60390 38.051 6.49e-96 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g04117 K03267 - gmx:100793653 845.499