Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04116 ATGGATATCGAAGATGACATTCGATCTTTACAGCTTGACTCAGCAGAAGATGTTAACGGGGTGGTAAATCCAGAAGATGAGAAGCCAGATGTTGATGATTTAGATAAGATGGATGAAGATCCTAAGCAGGAGGTTCAGGTTGAGGCTGTTGAGGCCGAGCCAAAAGATAAGGAAATTCATGCTGTTGAGGCTGAGCCTAAAGCAAAAGATAAGGAAATTCCTCCTGTTCAAGTTGAAGAAGTTGAGCAGATGGAGAAAAGGCACTTGAATGTTGTGTTTATTGGGCATGTTGACGCTGGCAAGTCTACAACTGGAGGCCAGATACTTTTCCTCAGTGGTCAGGTTGATGATCGAACTATCCAAAAATATGAGAAAGAAGCTAAGGACAAAAGTAGAGAAAGCTGGTACATGGCTTATATTATGGACACAAATGAGGAGGAGAGAGCAAAGGGAAAGACAGTTGAAGTTGGAAGAGCACACTTTGAGACAGAGACAACGAGGTTCACCATTTTGGATGCACCTGGCCACAAGAGCTATGTTCCTAATATGATTAGTGGTGCATCTCAAGCTGACATTGGAGTGTTGGTAATTTCTGCCCGGAAGGGAGAGTTTGAAACTGGATTTGAGAGAGGTGGACAAACTCGTGAACATGTCCAGCTTGCCAAAACATTGGGTGTAACTAAGCTGCTTGTGGTTGTCAATAAAATGGATGATCCTACAGTAAACTGGGAAAAAGAAAGGTATGATGAAATCGAGTTAAAGGTGATTCCATTTCTAAAGCAATCAGGATACAATGTAAAGAAAGATGTCTCATTTTTACCAATATCGGGGCTCATGGGTTTTAACTTAAAAACTAGAATGGATAAAAGCACTTGTTCATGGTGGGACGGGCCTTGCTTATTTGAAGCCCTTGATAGTATCGATGTTCCTATGGGAGATCCCAAAAATCCTTTCAGGATGCCTATAATTGACAAGTTCAAAGACATGGGAACTGTTGCTATGGGCAAAGTTGAATCTGGGACTATTCGGGAGGGAGATTCCCTTTTCGTTATGCCTAATAAGGATCAAGTTAAAGTTGTTGCTGTATATATTGATGAAAATCGGGTAAAACGTGCCGGACCTGGTGAAAATTTACGGGTTCGATTATCTGGTGTTGAAGAAGAAGACATATCAGCTGGGTTCGTCCTTTGTAGTGTTGCAAATCCAATACCAGCAGTTACCGAGTTTGTTGCACAGTTGGCAATACTTGAATTATTGGACAATGCTATTTTTACTGCTGGATACAAGGCTGTTCTGCACGTCCACTCTGTAGTTGAGGAATGTGAGATTGTTGAACTATTGCACCAAATTGACCCAAAGACAAGGAAGCCTTTGAAAAAGAAAATTCTCTTTGTAAAGAACGGTGCTGTTGTATTATGCCGTGTTCAGGTTGGTAGCTTGATATGCATTGAGAAGTTCTCTGATTATCCACAACTAGGGAGGTTCACTCTTCGCACTGAAGGAAAAACTGTTGCTGTGGGAAAAATCACTGCTATGTGA 1539 0.4146 MDIEDDIRSLQLDSAEDVNGVVNPEDEKPDVDDLDKMDEDPKQEVQVEAVEAEPKDKEIHAVEAEPKAKDKEIPPVQVEEVEQMEKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERAKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFERGGQTREHVQLAKTLGVTKLLVVVNKMDDPTVNWEKERYDEIELKVIPFLKQSGYNVKKDVSFLPISGLMGFNLKTRMDKSTCSWWDGPCLFEALDSIDVPMGDPKNPFRMPIIDKFKDMGTVAMGKVESGTIREGDSLFVMPNKDQVKVVAVYIDENRVKRAGPGENLRVRLSGVEEEDISAGFVLCSVANPIPAVTEFVAQLAILELLDNAIFTAGYKAVLHVHSVVEECEIVELLHQIDPKTRKPLKKKILFVKNGAVVLCRVQVGSLICIEKFSDYPQLGRFTLRTEGKTVAVGKITAM 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04116 512 Pfam Elongation factor Tu C-terminal domain 403 511 IPR004160 -
Vifa6g04116 512 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 142 157 IPR031157 -
Vifa6g04116 512 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 314 400 - -
Vifa6g04116 512 Pfam Elongation factor Tu GTP binding domain 86 288 IPR000795 GO:0003924|GO:0005525
Vifa6g04116 512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 321 IPR027417 -
Vifa6g04116 512 CDD EF1_alpha 90 310 - -
Vifa6g04116 512 MobiDBLite consensus disorder prediction 1 61 - -
Vifa6g04116 512 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 64 310 - -
Vifa6g04116 512 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 86 315 IPR000795 GO:0003924|GO:0005525
Vifa6g04116 512 Pfam Elongation factor Tu domain 2 330 397 IPR004161 GO:0005525
Vifa6g04116 512 PRINTS GTP-binding elongation factor signature 149 157 IPR000795 GO:0003924|GO:0005525
Vifa6g04116 512 PRINTS GTP-binding elongation factor signature 229 238 IPR000795 GO:0003924|GO:0005525
Vifa6g04116 512 PRINTS GTP-binding elongation factor signature 169 179 IPR000795 GO:0003924|GO:0005525
Vifa6g04116 512 PRINTS GTP-binding elongation factor signature 185 196 IPR000795 GO:0003924|GO:0005525
Vifa6g04116 512 PRINTS GTP-binding elongation factor signature 90 103 IPR000795 GO:0003924|GO:0005525
Vifa6g04116 512 MobiDBLite consensus disorder prediction 21 61 - -
Vifa6g04116 512 CDD eRF3_II 317 398 - -
Vifa6g04116 512 FunFam Putative translation elongation/initiation factor family protein 404 512 - -
Vifa6g04116 512 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 407 511 IPR009001 -
Vifa6g04116 512 Gene3D Translation factors 405 512 - -
Vifa6g04116 512 PANTHER TRANSLATION FACTOR 79 511 - -
Vifa6g04116 512 CDD eRF3_C_III 404 510 - -
Vifa6g04116 512 SUPERFAMILY Translation proteins 310 402 IPR009000 -
Vifa6g04116 512 Gene3D - 68 310 IPR027417 -
Vifa6g04116 512 Gene3D Translation factors 315 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04116 Vifa-Chr6 1353627248 1353635640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g04116 85 512 Eukaryotic Initiation Factors Gene Family AT5G60390 38.051 7.64e-96 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g04116 K03267 - gmx:100793653 850.121