Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04091 ATGGAAAAATTTTCTTCTCGGTCACTCTCAATGAACAAAGATGTGTCATCTGTGGCTCCCTTCATTGCTTCTACCCAATCTGGAACCACTGCATCTAAGATGGCGTACATGGAACGCCTTGTTAGTGAACTCAACAATTCTGATCTTCGAGATAACGCTATTCGTGTGCTCTCCAAGAGGACTGACTTATTCAAGGAACTTGCACCTTTATTGTGGAATTCTTTTGGTACCATTGTGCTACTTTTACAGGAAATAGTTTCAATATATCCTAATCTTTCACCACCAAATCTCAATTCTGCACAATCAACTCGAGTGTGCAATATTCTTGCACTACTTCAGGGTGTGGCATCTCATTCTGATACAAAAATGTTGTTCATCGATGCTAACATACCGTTGTATTTGTACCCTTTCCTTAAAACAAGAAACAATGTACCACAATTTGAGCACTTGAGGCTTGCTAGTCTTGGAGTCATTGGTGCATTGGTGAAGGTTAACACCAAAGAAGTAATAAGTTTTCTTCTTTCAAGTGAGATAATTCCATTGTGCTTGAGCAATATGGAAATCGGCAAAGAAATATCAAAAACTATTGCAACATTTATAATTGAAAAAATTCTAGCAGATGAAGAGGGTTTGGCTTATGTTTGTGCCACAGTAGAACGCTTTTTTGCAGTAAGTCGAGTTTTGGACATGATGTTGGAAAGTCTTCAAATACAACCTTCACTTCGTCTTTTGAAGCTTGTAATTCAGTGCTATTCTCGTTTGTCTAACAATCATAGCAGGGCTGGTATTGCACTAACAAGATGTCTTCCAAACATGCTCAGAAATACCACTTTCATTAATCACCTTCGTGAAGATCCAGCAATTTGGAGGTGGGTAAACCAGTTGTATGAAAATGTTGGGAAAAATGAGGTTCTTTTAGTACCAGGTGGAGGAGTAATCAATGATAGGGTTGGATCATCACTGTCAGGAAAGTGA 975 0.3856 MEKFSSRSLSMNKDVSSVAPFIASTQSGTTASKMAYMERLVSELNNSDLRDNAIRVLSKRTDLFKELAPLLWNSFGTIVLLLQEIVSIYPNLSPPNLNSAQSTRVCNILALLQGVASHSDTKMLFIDANIPLYLYPFLKTRNNVPQFEHLRLASLGVIGALVKVNTKEVISFLLSSEIIPLCLSNMEIGKEISKTIATFIIEKILADEEGLAYVCATVERFFAVSRVLDMMLESLQIQPSLRLLKLVIQCYSRLSNNHSRAGIALTRCLPNMLRNTTFINHLREDPAIWRWVNQLYENVGKNEVLLVPGGGVINDRVGSSLSGK 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04091 324 Gene3D - 28 300 IPR011989 -
Vifa6g04091 324 SUPERFAMILY ARM repeat 41 274 IPR016024 -
Vifa6g04091 324 PANTHER UNCHARACTERIZED 30 302 IPR007216 GO:0006402|GO:0030014
Vifa6g04091 324 FunFam Cell differentiation family, Rcd1-like containing protein 29 301 - -
Vifa6g04091 324 Pfam Cell differentiation family, Rcd1-like 40 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04091 Vifa-Chr6 1347907375 1347919816 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Vifa6g04091 Rcd1 3.2e-104 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g04091 K12606 - gmx:100792752 348.977