Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04090 ATGGAAAAATTTTCTTCTCGGTCACTCTCAATGAACAAAGATGTGTCATCTGTGGCTCCCTTCATTGCTTCTACCCAATCTGGAACCACTGCATCTAAGATGGCGTACATGGAACGCCTTGTTAGTGAACTCAACAATTCTGATCTTCGAGATAACGCTATTCGTGTGCTCTCCAAGAGGACTGACTTATTCAAGGAACTTGCACCTTTATTGTGGAATTCTTTTGGTACCATTGTGCTACTTTTACAGGAAATAGTTTCAATATATCCTAATCTTTCACCACCAAATCTCAATTCTGCACAATCAACTCGAGTGTGCAATATTCTTGCACTACTTCAGGGTGTGGCATCTCATTCTGATACAAAAATGTTGTTCATCGATGCTAACATACCGTTGTATTTGTACCCTTTCCTTAAAACAAGAAACAATGTACCACAATTTGAGCACTTGAGGCTTGCTAGTCTTGGAGTCATTGGTGCATTGGTGAAGGTTAACACCAAAGAAGTAATAAGTTTTCTTCTTTCAAGTGAGATAATTCCATTGTGCTTGAGCAATATGGAAATCGGCAAAGAAATATCAAAAACTATTGCAACATTTATAATTGAAAAAATTCTAGCAGATGAAGAGGGTTTGGCTTATGTTTGTGCCACAGTAGAACGCTTTTTTGCAGTAAGTCGAGTTTTGGACATGATGTTGGAAAGTCTTCAAATACAACCTTCACTTCGTCTTTTGAAGCTTGTAATTCAGTGCTATTCTCGTTTGTCTAACAATCATAGGGCTGGTATTGCACTAACAAGATGTCTTCCAAACATGCTCAGAAATACCACTTTCATTAATCACCTTCGTGAAGATCCAGCAATTTGGAGGTGGGTAAACCAGTTGTATGAAAATGTTGGGAAAAATGAGGTTCTTTTAGTACCAGGTGGAGGAGTAATCAATGATAGGGTTGGATCATCACTGTCAGGAAAGTGA 972 0.3848 MEKFSSRSLSMNKDVSSVAPFIASTQSGTTASKMAYMERLVSELNNSDLRDNAIRVLSKRTDLFKELAPLLWNSFGTIVLLLQEIVSIYPNLSPPNLNSAQSTRVCNILALLQGVASHSDTKMLFIDANIPLYLYPFLKTRNNVPQFEHLRLASLGVIGALVKVNTKEVISFLLSSEIIPLCLSNMEIGKEISKTIATFIIEKILADEEGLAYVCATVERFFAVSRVLDMMLESLQIQPSLRLLKLVIQCYSRLSNNHRAGIALTRCLPNMLRNTTFINHLREDPAIWRWVNQLYENVGKNEVLLVPGGGVINDRVGSSLSGK 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04090 323 Gene3D - 28 299 IPR011989 -
Vifa6g04090 323 PANTHER UNCHARACTERIZED 30 301 IPR007216 GO:0006402|GO:0030014
Vifa6g04090 323 SUPERFAMILY ARM repeat 41 272 IPR016024 -
Vifa6g04090 323 FunFam Cell differentiation family, Rcd1-like containing protein 29 300 - -
Vifa6g04090 323 Pfam Cell differentiation family, Rcd1-like 40 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04090 Vifa-Chr6 1347907375 1347919816 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Vifa6g04090 Rcd1 8e-106 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g04090 K12606 - pop:7483613 352.443