Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04087 ATGGGGAAGAAGAAGAAGAGAGTCGCTTCGAAAGTATGGTGTTATTACTGCGATCGTGAATTCGATGACGAGAAGATCTTGGTTCAGCATCAGAAAGCTAAGCACTTTAAGTGTCATGTTTGTCATAAGAAGCTTTCTACTGCCGGTGGTATGTCCATTCATGTTCTTCAGGTTCACAAGGAAAACGTCACCAAGGTGCCAAATGCAAAACCTGGTAGAGAGAGTACAGATATTGAAATATACGGAATGCAAGGGATTCCACCAGATGTATTGGCTTCTCATTATGGAGATGAAGATGATGATGTTCCATCAAAGACAGCCAAGGTGGATATCCCATCAACTCCGTTTTTAGGTGGAATGGCGCCACCTCCTATGGGTGCCGGATATCCTCCACGAACGATGTTGGGAACAATTCGACCAATGTATAATCCTGCTCTACCAATGCCTCCTAATGCTTGGGGAGTGGCTCCACCTCGACCTCAGCCATGGTTTGCTCAGCCTCCAGCTGCTTCAATTCCCCCTCCTGTTCCATACGCACATCAACCGTTATTTCCCGTGCAGAATATGAGGCCTCCAATGCCATCAACTAATTCACCCGCATTACAAGCTCAGATTACTCCTCCTGGATTGCCAACATCTACACCTTCTGTCCCAGTTTCACAGCCTTTATTTCCTGTTGTTGGAAATAATCACACAACGGCTCAAAGTTCTCCATTTTCCGCTGCACCTCTGTCGTCAACTGTTCCATCAGGAAATCCTGTATTTTCTTCAAATGTCCCTATGGATGCACATTTGGGCATTAACTCTTCTGTGACAAGTAGTTATCAAGCAATAGGGCTTCAAGGTGGGACAGCAAGTAACTCCCATTCTTACGCGTCTGGCCCAAATACTGGTGGTCCTTCAATTGGACCTCCCCCAGTAATCTCAAACAAAGCTCCTGCTACTCAGCCCGCCACTAACGAAGTCTACTTAGTATGGGATGACGAGGCAATGTCCATGGAGGAAAGAAGAATGTCTTTAACAAAATATCAGGTGCATGATGAAAGTAGCCAGATGAGCTCCATTGATGCAGCCATAGATAAGAGGATACTTGAAAGCAGACTGGCTGGACGTATGGCATTTTAG 1125 0.4569 MGKKKKRVASKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMSIHVLQVHKENVTKVPNAKPGRESTDIEIYGMQGIPPDVLASHYGDEDDDVPSKTAKVDIPSTPFLGGMAPPPMGAGYPPRTMLGTIRPMYNPALPMPPNAWGVAPPRPQPWFAQPPAASIPPPVPYAHQPLFPVQNMRPPMPSTNSPALQAQITPPGLPTSTPSVPVSQPLFPVVGNNHTTAQSSPFSAAPLSSTVPSGNPVFSSNVPMDAHLGINSSVTSSYQAIGLQGGTASNSHSYASGPNTGGPSIGPPPVISNKAPATQPATNEVYLVWDDEAMSMEERRMSLTKYQVHDESSQMSSIDAAIDKRILESRLAGRMAF 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04087 374 CDD SUF4-like 11 92 - -
Vifa6g04087 374 PANTHER ZINC FINGER PROTEIN 207 1 374 - -
Vifa6g04087 374 SMART c2h2final6 12 35 IPR013087 -
Vifa6g04087 374 SMART c2h2final6 36 59 IPR013087 -
Vifa6g04087 374 MobiDBLite consensus disorder prediction 286 315 - -
Vifa6g04087 374 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Vifa6g04087 374 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Vifa6g04087 374 Gene3D Classic Zinc Finger 2 63 - -
Vifa6g04087 374 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g04087 1 354 C2H2 Transcription Factor Family AT1G30970 64.011 6.76e-145 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa6g04087 None None None