Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04085 ATGCTAGGTTCATTACCTATACTGCCTCTACCAGCTCCTCCTATAGACGGAAATCTCGGTCCTCTCCCCGAGGCTCAACTCACTCAGGAGGAGGTGGAGGAGAGGAATGAGAGATCCAGCGTCGAGGAAGTAGCAGCACCGACATCCATTGCCACACACACTAGAACTATTGGAATAATTCACCCTCCTCCGGACATTAGAACCATTGTTGATAAAACCTCTCAGTTTGTCGCGAAAAATGGTATTGATTTCGAGAAGAGGATTGTTGCTAATAATGCAGGGAATGCTAAGTTTAATTTTTTGAACTCGTCGGATCCTTATCATGCTTATTATCAGCATAGGCTGGCTGAGTTTCGCGCGCAGAATCAGTCGTCTACTCAACTGCCTGGGGATTCGGTTTTACCGGAATCAGCTACACCTGCGCCGGCTGCTGATAGTAATAGTAGCGATGTAGTGATGGCTGAGAAGCCTGATGTTTCTGCCCAGTTTAGACCGGTAAGGAAAGTACTTGATCCTCCGGAGGCTGAGCAGTATACAGTTAGGCTTCCGGAAGGAATTACAGGGGAAGAGCTTGATATAATAAAGCTTACGGCACAATTTGTGGCGAGAAATGGGAAATCGTTTTTGACAGGTTTGACGAGTAGGGAAATTAATAATCCTCAGTTTCATTTCATGAAACCGACCCATAGTATGTTTACATTTTTCACTTCTCTTGCTGATGCGTATTCAAAGGTTTTGATGCCTCCGAAGGGTTTGACGGAGAAACTGAAGAAGAGTGTCCCGGATATGACTACTGTGCTTGAAAGATGTGTGAATAGGTTGGAATGGGAGCGTTCGCAAGAGCAAGCTAGGCAAAAGGCGGAAGATGAGATAGAGCAAGAAAGAATACAGATGGCTATGATTGATTGGCATGATTTTGTGGTGGTTGAATCAATAGATTTTGCTGACGATGAGGATGAAGAATTACCTCCTCCAATGACCCTTGAGGAGGTTATAAGGAGAAGCAAGATGACGCCTATGGAAGAAGATATCGTTGAGCCAGGAAAGGAAGTAGAAATGGAAATGGACGAAGAAGAGGCCCAGCTTGTTGAAGAGGGAATGAGAGCTGCGAGTTTGGAAGACAATGATGAAGTGAAGAAAAATGAAGTCAGGGTTACTGAAGATCCTGAACCACCGATGAGGATTGTGAAGAACTGGAAGAGACCAGAAGACAGGCTTCCTGCAGATAAAGATTCAACCAAGTTTGTGGTTTCTCCTATCACCGGTGAACTGATTCCTATTAGTGAAATGTCAGAGCATATGCGAATTTCCCTCATTGATCCCAAGTACAAAGAACAAAAAGAAAGGATGTTTGCCAAAATTCGGGAAACCACTTTGGCACAGGATGATGAAATCTCAAGAAACATTGTTGGACTTGCTCGGACCCGTCCTGATATTTTTGGTACTACTGAAGAAGAGGTTTCCAATGCTGTCAAGGCTGAAATTGAGAAGAAAAACGATGAGCAACCTAAGCAGGTTATTTGGGATGGTCACAGTGGTAGTATCGGCCGTACTGCAAACCAAGCAATGTCACAGAATATTGGGATTGAGGATCAAAATGATGCTTCTAATAATAACCTCCCCGGTCCTGCCGCACCTCCTCCAAGACCTGGTATGCCTTCAATTCGTCCTCTTCCGCCACCACCTGGACTAGCTTTAAATCTACCCCGTGGTCCTATGAATAACATGCAGTATTCTAATCCTAACAACAGTGGCCTTCCAATGCCTCCACCAAGACCACCAGGCATGCACATGATGCAATCTCTCCGACCAGCTCCCCCTCCTCCAATGCAAATGTCCTCTGGACAGCATCCCATGATGGGTGGTCAACCACACCAAATGCATCCATCAATTCCTATGAATAACCAAGGAATTCCAATTCCTCCGCCACCTGGATCTCAATTCACTCCTATTCCTGTTCCACGGCCTTATGTTCCTCTCTCTCATCCTCCATCAGGGATGCCTATGATGCATCCACCACCTCCGCCTCAAGGATTACCACCACCACCGCCACCTGAGGAAGCTCCTCCCCCGCTTCCGGAGGAACCGGAACCCAAGAGGCAGAAGCATGATGATTCTGCTCTGATCCCTGAGGATAAATTTCTGGCTCAACATCCGGGACCTGCTCGCTTCAGTATATCTGTTCCTAATATTGATGAAGGAAATCTCAAAGGACAAGTTCTTGAAATAACTGTGCAATCTCTATCTGAAACTGTTGGCGGCCTGAAAGAAAAAATTGCCGGGGAGATCCAACTCCCTGCTAACAAGCAGAAATTGAGTGGAAAGCCAGGCTTTCTCAAGGACAATTTGTCACTTGCACATTACAATCTTAGTGGAGGAGAAACACTCTCCCTAGCATTGAGAGAGCGTGGTGGTAGAAAGAGATGA 2427 0.4586 MLGSLPILPLPAPPIDGNLGPLPEAQLTQEEVEERNERSSVEEVAAPTSIATHTRTIGIIHPPPDIRTIVDKTSQFVAKNGIDFEKRIVANNAGNAKFNFLNSSDPYHAYYQHRLAEFRAQNQSSTQLPGDSVLPESATPAPAADSNSSDVVMAEKPDVSAQFRPVRKVLDPPEAEQYTVRLPEGITGEELDIIKLTAQFVARNGKSFLTGLTSREINNPQFHFMKPTHSMFTFFTSLADAYSKVLMPPKGLTEKLKKSVPDMTTVLERCVNRLEWERSQEQARQKAEDEIEQERIQMAMIDWHDFVVVESIDFADDEDEELPPPMTLEEVIRRSKMTPMEEDIVEPGKEVEMEMDEEEAQLVEEGMRAASLEDNDEVKKNEVRVTEDPEPPMRIVKNWKRPEDRLPADKDSTKFVVSPITGELIPISEMSEHMRISLIDPKYKEQKERMFAKIRETTLAQDDEISRNIVGLARTRPDIFGTTEEEVSNAVKAEIEKKNDEQPKQVIWDGHSGSIGRTANQAMSQNIGIEDQNDASNNNLPGPAAPPPRPGMPSIRPLPPPPGLALNLPRGPMNNMQYSNPNNSGLPMPPPRPPGMHMMQSLRPAPPPPMQMSSGQHPMMGGQPHQMHPSIPMNNQGIPIPPPPGSQFTPIPVPRPYVPLSHPPSGMPMMHPPPPPQGLPPPPPPEEAPPPLPEEPEPKRQKHDDSALIPEDKFLAQHPGPARFSISVPNIDEGNLKGQVLEITVQSLSETVGGLKEKIAGEIQLPANKQKLSGKPGFLKDNLSLAHYNLSGGETLSLALRERGGRKR 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04085 808 FunFam Splicing factor 3a, subunit 1 186 244 - -
Vifa6g04085 808 MobiDBLite consensus disorder prediction 531 554 - -
Vifa6g04085 808 SMART surpneu2 67 120 IPR000061 GO:0003723|GO:0006396
Vifa6g04085 808 SMART surpneu2 191 244 IPR000061 GO:0003723|GO:0006396
Vifa6g04085 808 Pfam Surp module 191 242 IPR000061 GO:0003723|GO:0006396
Vifa6g04085 808 Pfam Surp module 67 118 IPR000061 GO:0003723|GO:0006396
Vifa6g04085 808 CDD Ubl_SF3a120 721 801 IPR035563 -
Vifa6g04085 808 Coils Coil 277 297 - -
Vifa6g04085 808 MobiDBLite consensus disorder prediction 692 711 - -
Vifa6g04085 808 ProSiteProfiles Ubiquitin domain profile. 749 805 IPR000626 GO:0005515
Vifa6g04085 808 MobiDBLite consensus disorder prediction 578 600 - -
Vifa6g04085 808 Gene3D - 697 807 - -
Vifa6g04085 808 SUPERFAMILY Surp module (SWAP domain) 170 243 IPR035967 GO:0003723|GO:0006396
Vifa6g04085 808 Gene3D Surp module 186 244 IPR035967 GO:0003723|GO:0006396
Vifa6g04085 808 MobiDBLite consensus disorder prediction 584 600 - -
Vifa6g04085 808 Coils Coil 355 375 - -
Vifa6g04085 808 SUPERFAMILY Surp module (SWAP domain) 47 119 IPR035967 GO:0003723|GO:0006396
Vifa6g04085 808 FunFam Probable splicing factor 3A subunit 1 697 807 - -
Vifa6g04085 808 ProSiteProfiles SURP motif repeat profile. 69 111 IPR000061 GO:0003723|GO:0006396
Vifa6g04085 808 FunFam Splicing factor 3A subunit 1 53 124 - -
Vifa6g04085 808 Pfam Pre-mRNA splicing factor PRP21 like protein 262 474 IPR022030 -
Vifa6g04085 808 MobiDBLite consensus disorder prediction 377 401 - -
Vifa6g04085 808 SUPERFAMILY Ubiquitin-like 703 806 IPR029071 -
Vifa6g04085 808 MobiDBLite consensus disorder prediction 122 151 - -
Vifa6g04085 808 MobiDBLite consensus disorder prediction 635 691 - -
Vifa6g04085 808 ProSiteProfiles SURP motif repeat profile. 193 235 IPR000061 GO:0003723|GO:0006396
Vifa6g04085 808 Pfam Ubiquitin family 736 803 IPR000626 GO:0005515
Vifa6g04085 808 PANTHER SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED 47 755 IPR045146 GO:0003723|GO:0045292
Vifa6g04085 808 MobiDBLite consensus disorder prediction 634 722 - -
Vifa6g04085 808 Gene3D Surp module 53 126 IPR035967 GO:0003723|GO:0006396
Vifa6g04085 808 SMART ubq_7 729 801 IPR000626 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g04085 736 805 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 37.143 8.76e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g04085 K12825 - gmx:100790309 1176.39