Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04084 ATGGGTGTTCGGTTGAAGATGCAGAATCATCATCATCATCATCATCTCCATCCTTTGGCTTCGAAGTTGCACGAACAAGCAATGAACAAACGATTCACATTCATTCAAGCGCATAGAGGCTGGCTTTCGAGGTTTTTGTTGCTATGGATTCTTCTGATGGCGATAATTAGTTATTGTATCTATAGTAATATGGATGTGGATTCTAAAGTTAGAAGGAAAGAGGTTTTGGGTAGTCTTTGTGATCAAAGGGCTAGAATGTTGCAAGATCAGTTCAGTGTTAGTGTTAATCATGTTCATGCTCTTGCGATTCTTGTTTCGACTTTTCATTACTACAGAAACCCGTCTGCGATAGACCAGGAAACTTTTGCGGAATATACGGCTAGGACCGCGTTCGAAAGGCCGTTACTTAGTGGAGTGGCTTATGCGCAGAGAGTGGTTAATTCAGAAAGGGAGCAATTTGAGAAGCAACATGGAGTTGTTATAAAGACAATGGAAAGAGAGGCTTCGCAGGTTAAGGATGAGTATGCACCCGTCATATTTGCTCAAGAAACTGTCTCTTATCTCGAGTCTATAGATATGATGTCTGGCGAGGAGGACCGAGAGAACATTATGAGAGCTCGAGCTACTGGAAAAGCTGTTCTGACTAGTCCTTTTAGGTTGTTGGGTTCTCATCATCTTGGCGTGGTTTTAACATTTCCTGTTTACAAATCAAAGCTCCCTCCAAACCCAACAACCGAAGAGCTAATTAAAGCGACGGCAGGATATGTCGGAGGATCCTTTGATGTCGAGTCCCTTGTGGAGAATTTACTCGGTCAACTTGCTGGTCACCAAGCAATTTTGGTGAATGTATACGATATCACGAACTCTACCGACCCTCTAATCATGTATGGCAACCAATACGAAGAAGGTGATGTTTCTCTTGTCCATGAAAGTAAGCTTGATTTTGGAGATCCATACAGGAAACATCAAATGATATGTAGGTATCACCAGAAGGCACCGACAAATTGGGTAGCTCTTACCACTGCAACCCTATTCTTTGTGATTCTTTTGTTAATCGGTTACATTTTATACGGTGCTGGAAATCATATTGTCAAAGTAGAGGATGATTTCCATGAAATGGAGGAATTAAAAGTTCGAGCTGAAGCAGCTGATGTTGCCAAGTCACAGTTTCTAGCTACTGTCTCTCATGAAATTAGAACACCGATGAATGGCATTTTAGGAATGCTTGGTCTGCTTCTACGTACGGAATTGAACTCAACCCAACGGGACTATGCTCAGACAGCTCAAGCATGTGGAAAGGCACTGATAGCATTAATAAATGAAGTGCTTGACCGAGCTAAAATCGAAGCTGGAAAATTAGAGCTAGAAGCGGTTCCATTTGACCTTCGTTCCATACTTGATGATGTCCTTTCTCTGTTTTCCGAGAAGTCTAGACACAAAGGTTTAGAGCTCGCAGTGTTTGTTTCCGATAAAGTTCCAGATATTGTTATGGGAGATCCTGGGAGATTCAGACAAATAGTAACAAATCTTGTCGGAAATTCTGTTAAATTCACTGATCGAGGACATATATTTGTTAAAGTTCATTTAGCTGAAAATAGGAAGTCTGCAATGAATGGAAAATTCGAGACTTTTCGAAACGGAGGATCTGAAGAAGTTATGCATATATCCGGTGGTGGCTATAATCTCAAAACCTTGAGTGGATGTGAAGCAGCTGATGAACGCAACAACTGGGATAATTTTAAGCATCTAATTGCCGATGAAGAGTTTTTCTGTGACGCATCGACTAAAAAAGTGGCCACTAACGAATCTTATGAGCAAGTAACTTTGATGGTCTGCGTCGAAGACACTGGAGTTGGAATCCCTTTCTCGGCACAAGATAGGATTTTCATGCCATTTGTTCAGGCGGATAGCTCAACATCTAGAAACTACGGAGGTACCGGCATTGGCTTGAGTATCAGTAAATGCCTGGTTGAACTTATGGGCGGTGAAATAAACTTTATAAGCCGGCCGCAGGTTGGAAGCACTTTTTCGTTTACCGCAGATTTTAAAATATTTAAGAAGAATTTAATACCCGACGTGAAGAAGGTTAATTATGAAGATCTACCTTCGAGTTTCGGAGGACTTAAAGCCGTTGTTGTCGACGGTAAACCTGTTAGAGCTGCCGTAACTAGATACCATTTGAAGAGACTTGGGATACAAGCTAAAGTCGCAAACGCCATCAATAAAGCTGTTTCTTTATGCGGGAAAAATGGTTCTTTGACTACAGGATTATTCCAGCCTGATATTATTTTTGTCGAGAAAGATTCGTGGGTTTGTGGAGAGGACGGGAACTTCAGTGTGCGGCAACTAGACTGGAAACAGAACGGACATATATTTAAGATGCCTCAAATGATCCTTCTTGCGACAAATATTAGCAACGACGAATTCGATAGAGTGAAATCCGCAGGTTTTAGCGACACGGTGATCATGAAGCCGCTGAGAGCAAGTATGGTGGGAGCTTGTCTTCAGCAAGTTTTGGGGTCAGGCAAGAAGAGACAGCTAGGAAAAGAAATGCCTAACGGTTCAACTTCCGTTCGAAGCCTTCTTTTTGGAAAGAAAATTTTGGTGGTTGATGACAATGGAGTGAACCGAAGAGTGGCTGCGGGCGCGTTGAAAAATTTCGGAGCTGAAGTGAAGTGTGCAGATAGCGGCAAAGCCGCTCTTGAAATGCTTCAATTCCCTCACGATTTCGATGCTTGCTTCATGGATATTCAAATGCCCGAAATGGACGGGTTTGAAGCGACGCGTCGAATTCGGGGGATGGAGAGGGCGGCGGCAAACGAGAAGACGAACACGAACGGTGAAGCATGCGGCGAAGCGAGAAGTGAGTTCCACTTACCGATATTGGCGATGACGGCGGATGTAATCCATGCAACATATGAAGAGTGTTTGAAATGTGGAATGGATGGATATGTGTCAAAACCATTTGAAGAAGAGAATCTTTATCAAGCAGTTGCAAAGTTTTTCAAAACAAAGGATACTATTACTACAATAGATTCATAA 3042 0.4234 MGVRLKMQNHHHHHHLHPLASKLHEQAMNKRFTFIQAHRGWLSRFLLLWILLMAIISYCIYSNMDVDSKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRNPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVNSEREQFEKQHGVVIKTMEREASQVKDEYAPVIFAQETVSYLESIDMMSGEEDRENIMRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPNPTTEELIKATAGYVGGSFDVESLVENLLGQLAGHQAILVNVYDITNSTDPLIMYGNQYEEGDVSLVHESKLDFGDPYRKHQMICRYHQKAPTNWVALTTATLFFVILLLIGYILYGAGNHIVKVEDDFHEMEELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLGLLLRTELNSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIVTNLVGNSVKFTDRGHIFVKVHLAENRKSAMNGKFETFRNGGSEEVMHISGGGYNLKTLSGCEAADERNNWDNFKHLIADEEFFCDASTKKVATNESYEQVTLMVCVEDTGVGIPFSAQDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGEINFISRPQVGSTFSFTADFKIFKKNLIPDVKKVNYEDLPSSFGGLKAVVVDGKPVRAAVTRYHLKRLGIQAKVANAINKAVSLCGKNGSLTTGLFQPDIIFVEKDSWVCGEDGNFSVRQLDWKQNGHIFKMPQMILLATNISNDEFDRVKSAGFSDTVIMKPLRASMVGACLQQVLGSGKKRQLGKEMPNGSTSVRSLLFGKKILVVDDNGVNRRVAAGALKNFGAEVKCADSGKAALEMLQFPHDFDACFMDIQMPEMDGFEATRRIRGMERAAANEKTNTNGEACGEARSEFHLPILAMTADVIHATYEECLKCGMDGYVSKPFEEENLYQAVAKFFKTKDTITTIDS 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04084 1013 FunFam Histidine kinase 4 117 332 - -
Vifa6g04084 1013 ProSiteProfiles Response regulatory domain profile. 866 1002 IPR001789 GO:0000160
Vifa6g04084 1013 Pfam Response regulator receiver domain 867 935 IPR001789 GO:0000160
Vifa6g04084 1013 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 440 679 IPR036890 -
Vifa6g04084 1013 ProSiteProfiles Histidine kinase domain profile. 393 684 IPR005467 -
Vifa6g04084 1013 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 498 683 IPR003594 -
Vifa6g04084 1013 Gene3D CHASE domain 117 332 IPR042240 -
Vifa6g04084 1013 PRINTS Bacterial sensor protein C-terminal signature 644 662 IPR004358 GO:0016310|GO:0016772
Vifa6g04084 1013 PRINTS Bacterial sensor protein C-terminal signature 609 623 IPR004358 GO:0016310|GO:0016772
Vifa6g04084 1013 PRINTS Bacterial sensor protein C-terminal signature 668 681 IPR004358 GO:0016310|GO:0016772
Vifa6g04084 1013 PRINTS Bacterial sensor protein C-terminal signature 627 637 IPR004358 GO:0016310|GO:0016772
Vifa6g04084 1013 SUPERFAMILY CheY-like 864 1003 IPR011006 -
Vifa6g04084 1013 Gene3D - 360 449 - -
Vifa6g04084 1013 PANTHER TWO-COMPONENT HISTIDINE KINASE 44 999 - -
Vifa6g04084 1013 Gene3D - 861 1010 - -
Vifa6g04084 1013 Gene3D - 703 843 - -
Vifa6g04084 1013 Gene3D - 450 688 IPR036890 -
Vifa6g04084 1013 Gene3D - 64 116 - -
Vifa6g04084 1013 Pfam His Kinase A (phospho-acceptor) domain 386 451 IPR003661 GO:0000155|GO:0007165
Vifa6g04084 1013 CDD HATPase_EvgS-ArcB-TorS-like 503 682 - -
Vifa6g04084 1013 SMART CHASE_2 113 298 IPR006189 -
Vifa6g04084 1013 SMART HKATPase_4 498 684 IPR003594 -
Vifa6g04084 1013 FunFam Histidine kinase 4 358 449 - -
Vifa6g04084 1013 SUPERFAMILY CheY-like 705 840 IPR011006 -
Vifa6g04084 1013 CDD REC_hyHK_CKI1_RcsC-like 867 998 - -
Vifa6g04084 1013 ProSiteProfiles Response regulatory domain profile. 709 839 IPR001789 GO:0000160
Vifa6g04084 1013 SMART HisKA_10 386 451 IPR003661 GO:0000155|GO:0007165
Vifa6g04084 1013 SMART REC_2 865 998 IPR001789 GO:0000160
Vifa6g04084 1013 Pfam CHASE domain 116 296 IPR006189 -
Vifa6g04084 1013 Coils Coil 436 456 - -
Vifa6g04084 1013 CDD HisKA 386 447 IPR003661 GO:0000155|GO:0007165
Vifa6g04084 1013 ProSiteProfiles CHASE domain profile. 113 325 IPR006189 -
Vifa6g04084 1013 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 372 452 IPR036097 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04084 Vifa-Chr6 1344464924 1344468923 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g04084 33 1003 Histidine Kinase Gene Family AT2G01830 71.093 0.0 1379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa6g04084 HATPase_c 1.4e-30 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g04084 K14489 - gmx:100818481 1640.94