Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04081 ATGATAAAACTTGAATTGCTTTTTCGAGGCTCGTTAAATTTGGTTTTCGTTTTGGTTTTCGTGCTTTCTATTATAATTATCCCAGCAAAATGTCAAGATGTAGAGGTTATGAATATTTTGAAAAGCGTCATAAATTCTCCAATTACCTTGGAATGGACAGATCCCGATGTATGCAAATGGAGGCGCATTCAATGTGATTCTAGAAAACGTGTTACTGCAATTCAATTAGGGAGTCAGAACCTCCAAGGTTTTCTCCCACAGGAGCTTGTGAAGTTAACAAATTTGCAAAGGTTTGAGTGTCAAAGTAACGCCCTCACAGGTTCATTCCCTTACCTATCAAAAACATTGCAAAGGCTTGTAATTCACGACAATAAATTCAGCTTTATCCCCGGCGATTTATTCACGGGAATGAGCAATTTGCAAGAAGTGAGAATGGACGACAACCCGTTTTCTCCATGGTGGATTCCTAATTCTCTCAGAGACTGTGTTTCACTCCAAACTTTCAGTGCTCAAAGTGCTGGAATTGTTGGGACCATCCCAAACTTTTTCGGCAGAGATGGTCCATTCCCCGGGTTGGTTTTTTTGGCGTTGTCTAATAACTTTTTAGAAGGTGTCTTGCCTGCTAGCCTATCTGGAAGTTCAATAGAGACTTTATTGGTGAATGGCCAAAATAGCAATAATAAACTCAATGGTACACTTGCCGTGATACAAAATATGGCTTCTTTGAAACAAATATGGGCTAATGGTAACTCCTTTACCGGTCCTATACCTGATTTATCGCGTCTTGATCAATTATCTGATATAAATTTAAGAGATAACCAATTGACGGGTGTTGTTCCACCTTCTCTTATGAACCTTCCAAGATTGCAAGTCGTGAATTTAACAAACAACTATCTTCAAGGTTCACCTCCCATGTTTAGAGACGGTGTTGGAGTTGATAATAATATGGATGGGGGTAGAAATCAATTTTGCACCAATATTTTGGGCCAACCGTGTAGTTCTCTTGTCAATGTTTTGTTATCAGTTATTGAACCTTTGGGTTATCCTCTCAAGTTTGCTGAAAGTTGGCAGGGTAATGATCCATGTGCTAATAAATGGTTAGGTATAGTTTGTTCTAATGGGAATATTTCAATTATCAATTTTCAAAGCATGGGAATAACTGGCACTATTTCTCCTACTTTTGCTACTCTTTCATCTTTGACTAAATTGTTGCTTGCAAACAATACTCTCATTGGTACCATACCAAAACAACTTACTACTATGCCTCTTCTACAAGAATTGGATGTTTCTAATAATCATTTATATGGCCGTGTTCCGTCCTTTCGTAACGGTGTGGTTCTTAAATTTGGTGGAAATCCTGATATTGGAAAGGATAAACCCAGTACTTATAGTAGCTATGGGCTTGAAGAAAGTGGTAGTAAAATCAATGTTGTTGGCGTCACAATTATAATTTTGGTGGGGCTTGTCATTTTACTTGGTGTTGTGGCATTATTAACTATTAAGTTCTGGAAAAGGCCGAGAGATAATTCAAGCAAAAGTACAAGTCATCATGATGCTATAATGGTAGATCATAAATATCAATTGGATGAGAATGTTGTAAATGTAAGTGTTGTTGCTGGTGGTGAGGGAGGTGGTGCATTAAGCCCCACTGGTAACATGGTGATTTCAATTCAAGTTTTGAGACAAGTTACACATAACTTTCGCGAGGAAAACATTATCGGGAAGGGTGGTTTTGGAACTGTTTACAAAGGAGAATTGCACGACGGGACACAAATTGCAGTGAAGAGGATGCAATCAGGAATAACAGACACAGACGAGAAAGGACCAAATGAATTCACATCAGAGATTGCGGTGCTTACAAAAGTTCGACATAAACATTTGGTTGCACTATTAGGATATTGCTTGGATGGAAGTGAAAGACTTTTGGTGTATGAGTATATGCCTCAGGGTGCTCTAAGTAAACACTTATTCAATTGGAAAGAGGAAGGGATGAAACCACTAGAATGGAAGACAAGGCTTAGTATTGCCTTGGATGTTGCTAGAGGTGTGGAATATCTTCATGGCTTGACTCAACAAATTTTTATCCATAGGGATCTCAAACCATCTAACATTTTACTTGGAGATGATTTGCGGGCTAAAGTATCTGACTTTGGATTGGTTCGACTTGCTCCCGAAGGAAAAGCTTCATTTCAAACTAGACTTGCTGGAACTTTTGGATATATGGCACCTGAGTATGCAGCCACGGGAAGACTAACAACAAAGGCGGATGTATATAGTTTTGGTGTAATTCTTATGGAGTTAGTAACAGGAAGGAAAGCGCTTGATGAAAGCCAACCAGAAGAGAATATCCACCTTGTAACATGGTTTCGTAGGATGTTATTGAATAAGGATTCATTTCGGACGATCATTGACAGGACAATCGAAGTCGATGAAGAAACATATGAAAGCATCAACACAGTTGCTGAGTTGGCAGGGCATTGTAGTGCAAGGGAGCCTTATCAGCGTCCTGATATGAGTCATGCAGTGAATGTGTTATCATCTCTTGTTGAAGTATGGAAACCTATAGAGCAAGATGTTGATGATGTATATGGGATCAACTTTGATATGACATTACCAGAAGCTCTCCAAAGGTGGCAAGCTTTTGAAGGAAAAAGCACCATGAATTTAACACTTTCTCCTTCATCGCTGAATACTAGTCGTGACAACACACACTCTCGTACATCTCCAAATGTCTCTTCATCACATTCATAA 2751 0.3897 MIKLELLFRGSLNLVFVLVFVLSIIIIPAKCQDVEVMNILKSVINSPITLEWTDPDVCKWRRIQCDSRKRVTAIQLGSQNLQGFLPQELVKLTNLQRFECQSNALTGSFPYLSKTLQRLVIHDNKFSFIPGDLFTGMSNLQEVRMDDNPFSPWWIPNSLRDCVSLQTFSAQSAGIVGTIPNFFGRDGPFPGLVFLALSNNFLEGVLPASLSGSSIETLLVNGQNSNNKLNGTLAVIQNMASLKQIWANGNSFTGPIPDLSRLDQLSDINLRDNQLTGVVPPSLMNLPRLQVVNLTNNYLQGSPPMFRDGVGVDNNMDGGRNQFCTNILGQPCSSLVNVLLSVIEPLGYPLKFAESWQGNDPCANKWLGIVCSNGNISIINFQSMGITGTISPTFATLSSLTKLLLANNTLIGTIPKQLTTMPLLQELDVSNNHLYGRVPSFRNGVVLKFGGNPDIGKDKPSTYSSYGLEESGSKINVVGVTIIILVGLVILLGVVALLTIKFWKRPRDNSSKSTSHHDAIMVDHKYQLDENVVNVSVVAGGEGGGALSPTGNMVISIQVLRQVTHNFREENIIGKGGFGTVYKGELHDGTQIAVKRMQSGITDTDEKGPNEFTSEIAVLTKVRHKHLVALLGYCLDGSERLLVYEYMPQGALSKHLFNWKEEGMKPLEWKTRLSIALDVARGVEYLHGLTQQIFIHRDLKPSNILLGDDLRAKVSDFGLVRLAPEGKASFQTRLAGTFGYMAPEYAATGRLTTKADVYSFGVILMELVTGRKALDESQPEENIHLVTWFRRMLLNKDSFRTIIDRTIEVDEETYESINTVAELAGHCSAREPYQRPDMSHAVNVLSSLVEVWKPIEQDVDDVYGINFDMTLPEALQRWQAFEGKSTMNLTLSPSSLNTSRDNTHSRTSPNVSSSHS 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04081 916 CDD STKc_IRAK 573 848 - -
Vifa6g04081 916 SUPERFAMILY L domain-like 335 441 - -
Vifa6g04081 916 PANTHER OSJNBA0070M12.3 PROTEIN 15 899 - -
Vifa6g04081 916 ProSitePatterns Protein kinases ATP-binding region signature. 573 595 IPR017441 GO:0005524
Vifa6g04081 916 Pfam Leucine rich repeat N-terminal domain 33 66 IPR013210 -
Vifa6g04081 916 Pfam Leucine rich repeat N-terminal domain 339 372 IPR013210 -
Vifa6g04081 916 SUPERFAMILY Protein kinase-like (PK-like) 550 845 IPR011009 -
Vifa6g04081 916 ProSiteProfiles Protein kinase domain profile. 567 849 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g04081 916 Pfam Protein kinase domain 568 843 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g04081 916 SMART LRR_typ_2 189 212 IPR003591 -
Vifa6g04081 916 SMART LRR_typ_2 112 136 IPR003591 -
Vifa6g04081 916 SMART LRR_typ_2 286 308 IPR003591 -
Vifa6g04081 916 SMART LRR_typ_2 421 443 IPR003591 -
Vifa6g04081 916 Gene3D Ribonuclease Inhibitor 335 459 IPR032675 -
Vifa6g04081 916 Gene3D Ribonuclease Inhibitor 31 329 IPR032675 -
Vifa6g04081 916 FunFam Leucine-rich repeat receptor-like kinase 334 458 - -
Vifa6g04081 916 ProSitePatterns Serine/Threonine protein kinases active-site signature. 694 706 IPR008271 GO:0004672|GO:0006468
Vifa6g04081 916 Gene3D Phosphorylase Kinase; domain 1 545 646 - -
Vifa6g04081 916 Gene3D Transferase(Phosphotransferase) domain 1 647 865 - -
Vifa6g04081 916 MobiDBLite consensus disorder prediction 891 916 - -
Vifa6g04081 916 SMART serkin_6 567 849 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g04081 916 FunFam Receptor-like kinase TMK4 31 329 - -
Vifa6g04081 916 SUPERFAMILY L domain-like 33 306 - -
Vifa6g04081 916 FunFam receptor protein kinase TMK1 647 864 - -
Vifa6g04081 916 FunFam receptor-like protein kinase FERONIA 544 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04081 Vifa-Chr6 1344101157 1344104000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g04081 71 851 Receptor kinase-like Gene Family AT5G07280 31.573 2.81e-80 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vifa6g04081 Pkinase 2.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g04081 K00924 - gmx:100788903 1260.36