Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04072 ATGCTGGGACTCAGTTCCTGTGCTTTTGCTGCTGATGATATGTCTCCTCCTCCAACTCGGAAGCATGATGTGTTCCTCAGCTTCCGAGGGGAGGACACACGTGACAACTTCATCAGTCATCTTTATGCTGAACTAGGCAGGAAAAAGATTGTAACATTTATGGATCACAAACTCGCTAGAGGCGAAGAGATTTCTCCAGCACTCTACAAAGCAATTGAAGAATCAATGATTTATGTTGTCATTTTGTCCAAGAACTATGCTTCTTCCACTTGGTGTTTAGACGAACTCGCCAAAATACTCGAATGCAAAGATAGATACGGAAGGGATGTGATACCAATCTTCTACGAGGTGGATTCATCAGATGTGAGGAATCAAAGACAGAGCTATGCAGAAGCTTTTGTTAAGCATCAACGTCGGTTTAAGGATGATCAACTGGATGCATGGAAAGCTGCTCTAACCCAAGTAGCTGGACTCTCTGGTTGGGATTCAAAAGTCACCAGACCAGAAAACAGGCTTATTGAAGAAATTGTGAAAGATATTTCAAGAAAATTGAATTTGAGTCACTCTTTCTTGAACGATTATCAGGGTATGATTGGAATTGAGAAGCATATTGAACAAATACAATCTTTGTTGCACCTTGAGTCAGAAGACTTTAGAGTTGTAGGAATTTGGGGTATGGGAGGAATAGGCAAAACAACAATTGCTAGAGCAATATATCACAAACTGACAACTAATTTCAGTTCAAGGAGTATTATTCTAAATGTTGGACAAGAAGTAGAAAGAGCTGGAGTATACCATGTGAAAAACAAATATATATCAGAGCTTCTAGGGGAAGACAGCACATCCTCTGGATTAAGTCTCAAAAGTACAAAGGCTCTCCTTGTTCTTGATGATGTGAGTCATTCAAATCAAGTTAAAGATTTAATTGGAACCTGCAGTAACTTCGGGGAGGGTACTAGAATCATTGTGACTAGTAGAGACATGCAGGTACTAAAGAACGCCGAAGCTAGTGAGATATATGAAGTTAAAGAGATGAGTTTTAAAGATTCTCTACAACTCTTCAGTTTAAATGCCTTTAAACAAAACTATCCCATAGAACCTTATGTTGACTTATCAAAAAAGGTATTAAACTATGCTAAAGGGGTTCCATTAGCTCTGGAAGTTTTAGGCTCCTTGCTTTACTCCAGAAGAACAGAGGAAGCATGGGAAAGTCAGTTAAAGAAGCTGGAAAAGCTACCCAACGATAACATTTTCAAAATGTTGAAATTAAGTTATGAAGGGTTGGACGAAGAAGAGAAGGATATATTTCTTGACATAGCTTGTTTCTATAGAGGATATTCAGAGAATGTTGTGGCACTAACACTGGATAGTTGTGGTTTCTCAGCACTTATTGGAATGGAAGTTCTCAAAGATAGGGGCCTTATATCTGTTTTAGAAGGTAGAATTGTGATGCACAATCTAATACAGGAAATGGGACACGAAATTGTTCGTCAACAATGTATCGAGGATCCTGGAAAACGTAGTCGATTATGGAAGCATGAGGAAATTTATAAAGTTTTAAAAAACAACAAGGGGACGGATGCAATCCGGTGTATGTTTCTGAACGTATGCAAGATAGAAAAAGTTCAACTACATGCTGAAACATTCAAAATGATGGATAATCTTAGAATGATTGTGTTTTATAACCCTTATGACTTTACAAAAGACTCAAATGTGATCCTTCCTACGTGTCTTGAAAGTCTTCCAGATGATTTAAAGTTTCTTCGTTGGGATGGCTTCCCTCAAAAATCTTTTCCACTGGACTTTTCCCCCAAAAATCTCGTTAAACTTGATATGCCACATAGCCATCTTACACAACTTTGGCAGGGTGATAAGGCCCTGATTCAAATACCAGACCTCGCTCAATGCCCAAACATTGAAGAAGTGATCCTTAGTCATTGCAAAAAGTTGGGCCAAGTTTACTCCTCTAGTTTCCTGTGCAAGCTCAAATGTTTATGGTTAAATGGTTGTATTAGCCTTAGGAGTTTACACATTCCTAGCAATATTCTCCTGACAACTTCTGGATTAATAGTGCTCCATGGCTGTCGCGATCTTGAGATGTTTTCAGTTGGTAATGCAAAAATGGGGGTTCAACTACACGGTCATACGGTCAGCAGGCACAGAAACATTTTTACTGCCCTAAAACTAAGAGAAAAGCGATCAAGGTCCCCTTACGAGAAATTCTCAAATTCTTTTGACCTCTTAGATTGTCTTAAGTTAAATACAGAACCAAAACATTATATGCAATTACTAAAATTAGAAGTGTTGAGAAAAGAGTCGCCCTCATTATTTCCGAGTCTTAATGAGCTTTGTTGGTTAGATCTCTCGTACTGTCAATTCCTCTTGAGCCTTCCAACTGAAATCTTCAAGTTAAAATTTTTAAAAAGACTTTACCTTCGCGGTTGCTTTAACTTTGAAGATTTTGGTGAGATTAAGGAGACTGTAGAAAGTTTAATGTTGCTTGTCTTAGACGAAACAGCAATCAAGGAACTACCTTCATCGTTGCACCATTTGGTTGGACTTGAAGAATTGAGCTTGCGGTATTGTCGGAAGCTTGAGATGATTCCATCTTCCATTGGAAGTCTTGGCAAACTCAGCAAGTTAGATCTTATCGGTTGTGAATCACTTGAAACTTTTCCAAGCAGTATTTTCAAATTGAAGTTGACAAAACTTGATTTACATTGTTGCTTAATGCTGAAAACCTTCCCAGAGATCTTGGAGCCTGCAGAAACTTTTGTTCACATTAATCTAACAAAAACAGCAATAAAGGAACTGCCTTCATCCATGGAGTATTTGGTCAGGCTTCAAACATTGTGCCTGAACATGTGCACTAATCTGGTGTCATTGCCAAACAGCATTGTGAATCTAAACTATCTATCTGAACTCGACTGTTCTGGCTGTCACAGTTTAACAGAAATCCCAAATAACATTGGTAGTTTCTCATCATTGAGGGAACTTTCACTGCAAGAAAGCAGTATTGTGAACCTTCCTGAGAGCATAGCTCATCTCTCAAGTTTAAAATCACTTGATTTAAGTGATTGCAAAAATCTTGCATGTATGCCACCACTACCCCCATCCTTGAACCAGTTGTTTGGGTATGATTGCCCCACCCTTGGAAGAATGATGACAAATTCAAGGTTGGAACTCCCATCAAATTCCAAAAAGGATACCTTCAAATTTCATTTCTTCAATAGTCACGAACTGGATGAAACTGCTTGCAGTAATATTGGGGCTGAATCATGGCTTAGAATCACCGAGGATGCATATCGGCCTTTGTTCTTCTGTTTTCCAGGGAGTGCAGTTCCTGGCTGGTTCCCTTATCGTTGTACTGGACGTCCGGTAACCATGAAAAGAGATTCTCAAGATTGGCCTAGTAATAATAGGCTTGTTGGTTTTGCTCTGAGTGTCGTTTTGGGACGTGTGGATATTGATGATACAATACCGATTTGCAGCAGCTTTACATACACATTAACATATGAATCTGATGGCCGGACACACATTGTCCATAATTTTAACGAGATAAACTACTATTTCCATACGAAGGGTCGAAGTAGGTCAGTCGTCCAAAATCACATATTCATGTGGAAATATCACTTGAACTTATCAAGCATTGGCAACAGGCTCTTAGATGCCCACAACTTCACTTTTGGGTGCAGCAAACTTGAATATCTCTCATCTTCTAAATCAAGTGTCATAGTGAAAGAGTATGGAATATGTCCTCTTTATAGAAAAGAAAAGGATGAAAATGGTGGTAATAGTTTAAGACATTGA 3810 0.3874 MLGLSSCAFAADDMSPPPTRKHDVFLSFRGEDTRDNFISHLYAELGRKKIVTFMDHKLARGEEISPALYKAIEESMIYVVILSKNYASSTWCLDELAKILECKDRYGRDVIPIFYEVDSSDVRNQRQSYAEAFVKHQRRFKDDQLDAWKAALTQVAGLSGWDSKVTRPENRLIEEIVKDISRKLNLSHSFLNDYQGMIGIEKHIEQIQSLLHLESEDFRVVGIWGMGGIGKTTIARAIYHKLTTNFSSRSIILNVGQEVERAGVYHVKNKYISELLGEDSTSSGLSLKSTKALLVLDDVSHSNQVKDLIGTCSNFGEGTRIIVTSRDMQVLKNAEASEIYEVKEMSFKDSLQLFSLNAFKQNYPIEPYVDLSKKVLNYAKGVPLALEVLGSLLYSRRTEEAWESQLKKLEKLPNDNIFKMLKLSYEGLDEEEKDIFLDIACFYRGYSENVVALTLDSCGFSALIGMEVLKDRGLISVLEGRIVMHNLIQEMGHEIVRQQCIEDPGKRSRLWKHEEIYKVLKNNKGTDAIRCMFLNVCKIEKVQLHAETFKMMDNLRMIVFYNPYDFTKDSNVILPTCLESLPDDLKFLRWDGFPQKSFPLDFSPKNLVKLDMPHSHLTQLWQGDKALIQIPDLAQCPNIEEVILSHCKKLGQVYSSSFLCKLKCLWLNGCISLRSLHIPSNILLTTSGLIVLHGCRDLEMFSVGNAKMGVQLHGHTVSRHRNIFTALKLREKRSRSPYEKFSNSFDLLDCLKLNTEPKHYMQLLKLEVLRKESPSLFPSLNELCWLDLSYCQFLLSLPTEIFKLKFLKRLYLRGCFNFEDFGEIKETVESLMLLVLDETAIKELPSSLHHLVGLEELSLRYCRKLEMIPSSIGSLGKLSKLDLIGCESLETFPSSIFKLKLTKLDLHCCLMLKTFPEILEPAETFVHINLTKTAIKELPSSMEYLVRLQTLCLNMCTNLVSLPNSIVNLNYLSELDCSGCHSLTEIPNNIGSFSSLRELSLQESSIVNLPESIAHLSSLKSLDLSDCKNLACMPPLPPSLNQLFGYDCPTLGRMMTNSRLELPSNSKKDTFKFHFFNSHELDETACSNIGAESWLRITEDAYRPLFFCFPGSAVPGWFPYRCTGRPVTMKRDSQDWPSNNRLVGFALSVVLGRVDIDDTIPICSSFTYTLTYESDGRTHIVHNFNEINYYFHTKGRSRSVVQNHIFMWKYHLNLSSIGNRLLDAHNFTFGCSKLEYLSSSKSSVIVKEYGICPLYRKEKDENGGNSLRH 1269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04072 1269 PRINTS Disease resistance protein signature 1014 1030 - -
Vifa6g04072 1269 PRINTS Disease resistance protein signature 286 300 - -
Vifa6g04072 1269 PRINTS Disease resistance protein signature 220 235 - -
Vifa6g04072 1269 PRINTS Disease resistance protein signature 379 393 - -
Vifa6g04072 1269 SUPERFAMILY RNI-like 771 1049 - -
Vifa6g04072 1269 ProSiteProfiles TIR domain profile. 20 184 IPR000157 GO:0007165
Vifa6g04072 1269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 439 IPR027417 -
Vifa6g04072 1269 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 898 IPR044974 GO:0006952
Vifa6g04072 1269 Gene3D - 345 433 IPR042197 -
Vifa6g04072 1269 Gene3D Ribonuclease Inhibitor 748 891 IPR032675 -
Vifa6g04072 1269 Gene3D - 186 342 IPR027417 -
Vifa6g04072 1269 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 161 IPR035897 -
Vifa6g04072 1269 Pfam Leucine Rich Repeat 606 625 IPR011713 -
Vifa6g04072 1269 Pfam C-JID domain 1109 1258 IPR045344 -
Vifa6g04072 1269 SUPERFAMILY RNI-like 583 820 - -
Vifa6g04072 1269 SUPERFAMILY "Winged helix" DNA-binding domain 416 521 IPR036390 -
Vifa6g04072 1269 Pfam NB-ARC domain 201 425 IPR002182 GO:0043531
Vifa6g04072 1269 FunFam Disease resistance protein (TIR-NBS-LRR class) 18 186 - -
Vifa6g04072 1269 SMART till_3 21 158 IPR000157 GO:0007165
Vifa6g04072 1269 Pfam TIR domain 21 197 IPR000157 GO:0007165
Vifa6g04072 1269 Gene3D - 19 185 IPR035897 -
Vifa6g04072 1269 Gene3D Ribonuclease Inhibitor 900 1051 IPR032675 -
Vifa6g04072 1269 Gene3D Ribonuclease Inhibitor 523 711 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04072 Vifa-Chr6 1341652947 1341657133 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g04072 782 951 WRKY Transcription Factor Family AT4G12020 36.471 4.45e-16 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g04072 - - ccaj:109803335 1376.3