Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04071 ATGCTGGGACTCAGTTCCTGTGCTTTTGCTGCTGATGATATGTCTCCTCCTCCAACTCGGAAGCATGATGTGTTCCTCAGCTTCCGAGGGGAGGACACACGTGACAACTTCATCAGTCATCTTTATGCTGAACTAGGCAGGAAAAAGATTGTAACATTTATGGATCACAAACTCGCTAGAGGCGAAGAGATTTCTCCAGCACTCTACAAAGCAATTGAAGAATCAATGATTTATGTTGTCATTTTGTCCAAGAACTATGCTTCTTCCACTTGGTGTTTAGACGAACTCGCCAAAATACTCGAATGCAAAGATAGATACGGAAGGGATGTGATACCAATCTTCTACGAGGTGGATTCATCAGATGTGAGGAATCAAAGACAGAGCTATGCAGAAGCTTTTGTTAAGCATCAACGTCGGTTTAAGGATGATCAACTGGATGCATGGAAAGCTGCTCTAACCCAAGTAGCTGGACTCTCTGGTTGGGATTCAAAAGTCACCAGACCAGAAAACAGGCTTATTGAAGAAATTGTGAAAGATATTTCAAGAAAATTGAATTTGAGTCACTCTTTCTTGAACGATTATCAGGGTATGATTGGAATTGAGAAGCATATTGAACAAATACAATCTTTGTTGCACCTTGAGTCAGAAGACTTTAGAGTTGTAGGAATTTGGGGTATGGGAGGAATAGGCAAAACAACAATTGCTAGAGCAATATATCACAAACTGACAACTAATTTCAGTTCAAGGAGTATTATTCTAAATGTTGGACAAGAAGTAGAAAGAGCTGGAGTATACCATGTGAAAAACAAATATATATCAGAGCTTCTAGGGGAAGACAGCACATCCTCTGGATTAAGTCTCAAAAGTACAAAGGCTCTCCTTGTTCTTGATGATGTGAGTCATTCAAATCAAGTTAAAGATTTAATTGGAACCTGCAGTAACTTCGGGGAGGGTACTAGAATCATTGTGACTAGTAGAGACATGCAGGTACTAAAGAACGCCGAAGCTAGTGAGATATATGAAGTTAAAGAGATGAGTTTTAAAGATTCTCTACAACTCTTCAGTTTAAATGCCTTTAAACAAAACTATCCCATAGAACCTTATGTTGACTTATCAAAAAAGGTATTAAACTATGCTAAAGGGGTTCCATTAGCTCTGGAAGTTTTAGGCTCCTTGCTTTACTCCAGAAGAACAGAGGAAGCATGGGAAAGTCAGTTAAAGAAGCTGGAAAAGCTACCCAACGATAACATTTTCAAAATGTTGAAATTAAGTTATGAAGGGTTGGACGAAGAAGAGAAGGATATATTTCTTGACATAGCTTGTTTCTATAGAGGATATTCAGAGAATGTTGTGGCACTAACACTGGATAGTTGTGGTTTCTCAGCACTTATTGGAATGGAAGTTCTCAAAGATAGGGGCCTTATATCTGTTTTAGAAGGTAGAATTGTGATGCACAATCTAATACAGGAAATGGGACACGAAATTGTTCGTCAACAATGTATCGAGGATCCTGGAAAACGTAGTCGATTATGGAAGCATGAGGAAATTTATAAAGTTTTAAAAAACAACAAGGGGACGGATGCAATCCGGTGTATGTTTCTGAACGTATGCAAGATAGAAAAAGTTCAACTACATGCTGAAACATTCAAAATGATGGATAATCTTAGAATGATTGTGTTTTATAACCCTTATGACTTTACAAAAGACTCAAATGTGATCCTTCCTACGTGTCTTGAAAGTCTTCCAGATGATTTAAAGTTTCTTCGTTGGGATGGCTTCCCTCAAAAATCTTTTCCACTGGACTTTTCCCCCAAAAATCTCGTTAAACTTGATATGCCACATAGCCATCTTACACAACTTTGGCAGGGTGATAAGGTTTTACCAAATTTGAAAATACTTGACCTTCGTGGTTCTCAGGCCCTGATTCAAATACCAGACCTCGCTCAATGCCCAAACATTGAAGAAGTGATCCTTAGTCATTGCAAAAAGTTGGGCCAAGTTTACTCCTCTAGTTTCCTGTGCAAGCTCAAATGTTTATGGTTAAATGGTTGTATTAGCCTTAGGAGTTTACACATTCCTAGCAATATTCTCCTGACAACTTCTGGATTAATAGTGCTCCATGGCTGTCGCGATCTTGAGATGTTTTCAGTTGGTAATGCAAAAATGGGGGTTCAACTACACGGTCATACGGTCAGCAGGCACAGAAACATTTTTACTGCCCTAAAACTAAGAGAAAAGCGATCAAGGTCCCCTTACGAGAAATTCTCAAATTCTTTTGACCTCTTAGATTGTCTTAAGTTAAATACAGAACCAAAACATTATATGCAATTACTAAAATTAGAAGTGTTGAGAAAAGAGTCGCCCTCATTATTTCCGAGTCTTAATGAGCTTTGTTGGTTAGATCTCTCGTACTGTCAATTCCTCTTGAGCCTTCCAACTGAAATCTTCAAGTTAAAATTTTTAAAAAGACTTTACCTTCGCGGTTGCTTTAACTTTGAAGATTTTGGTGAGATTAAGGAGACTGTAGAAAGTTTAATGTTGCTTGTCTTAGACGAAACAGCAATCAAGGAACTACCTTCATCGTTGCACCATTTGGTTGGACTTGAAGAATTGAGCTTGCGGTATTGTCGGAAGCTTGAGATGATTCCATCTTCCATTGGAAGTCTTGGCAAACTCAGCAAGTTAGATCTTATCGGTTGTGAATCACTTGAAACTTTTCCAAGCAGTATTTTCAAATTGAAGTTGACAAAACTTGATTTACATTGTTGCTTAATGCTGAAAACCTTCCCAGAGATCTTGGAGCCTGCAGAAACTTTTGTTCACATTAATCTAACAAAAACAGCAATAAAGGAACTGCCTTCATCCATGGAGTATTTGGTCAGGCTTCAAACATTGTGCCTGAACATGTGCACTAATCTGGTGTCATTGCCAAACAGCATTGTGAATCTAAACTATCTATCTGAACTCGACTGTTCTGGCTGTCACAGTTTAACAGAAATCCCAAATAACATTGGTAGTTTCTCATCATTGAGGGAACTTTCACTGCAAGAAAGCAGTATTGTGAACCTTCCTGAGAGCATAGCTCATCTCTCAAGTTTAAAATCACTTGATTTAAGTGATTGCAAAAATCTTGCATGTATGCCACCACTACCCCCATCCTTGAACCAGTTGTTTGGGTATGATTGCCCCACCCTTGGAAGAATGATGACAAATTCAAGGTTGGAACTCCCATCAAATTCCAAAAAGGATACCTTCAAATTTCATTTCTTCAATAGTCACGAACTGGATGAAACTGCTTGCAGTAATATTGGGGCTGAATCATGGCTTAGAATCACCGAGGATGCATATCGGCCTTTGTTCTTCTGTTTTCCAGGGAGTGCAGTTCCTGGCTGGTTCCCTTATCGTTGTACTGGACGTCCGGTAACCATGAAAAGAGATTCTCAAGATTGGCCTAGTAATAATAGGCTTGTTGGTTTTGCTCTGAGTGTCGTTTTGGGACGTGTGGATATTGATGATACAATACCGATTTGCAGCAGCTTTACATACACATTAACATATGAATCTGATGGCCGGACACACATTGTCCATAATTTTAACGAGATAAACTACTATTTCCATACGAAGGGTCGAAGTAGGTCAGTCGTCCAAAATCACATATTCATGTGGAAATATCACTTGAACTTATCAAGCATTGGCAACAGGCTCTTAGATGCCCACAACTTCACTTTTGGGTGCAGCAAACTTGAATATCTCTCATCTTCTAAATCAAGTGTCATAGTGAAAGAGTATGGAATATGTCCTCTTTATAGAAAAGAAAAGGATGAAAATGGTGGTAATAGTTTAAGACATTGA 3852 0.3871 MLGLSSCAFAADDMSPPPTRKHDVFLSFRGEDTRDNFISHLYAELGRKKIVTFMDHKLARGEEISPALYKAIEESMIYVVILSKNYASSTWCLDELAKILECKDRYGRDVIPIFYEVDSSDVRNQRQSYAEAFVKHQRRFKDDQLDAWKAALTQVAGLSGWDSKVTRPENRLIEEIVKDISRKLNLSHSFLNDYQGMIGIEKHIEQIQSLLHLESEDFRVVGIWGMGGIGKTTIARAIYHKLTTNFSSRSIILNVGQEVERAGVYHVKNKYISELLGEDSTSSGLSLKSTKALLVLDDVSHSNQVKDLIGTCSNFGEGTRIIVTSRDMQVLKNAEASEIYEVKEMSFKDSLQLFSLNAFKQNYPIEPYVDLSKKVLNYAKGVPLALEVLGSLLYSRRTEEAWESQLKKLEKLPNDNIFKMLKLSYEGLDEEEKDIFLDIACFYRGYSENVVALTLDSCGFSALIGMEVLKDRGLISVLEGRIVMHNLIQEMGHEIVRQQCIEDPGKRSRLWKHEEIYKVLKNNKGTDAIRCMFLNVCKIEKVQLHAETFKMMDNLRMIVFYNPYDFTKDSNVILPTCLESLPDDLKFLRWDGFPQKSFPLDFSPKNLVKLDMPHSHLTQLWQGDKVLPNLKILDLRGSQALIQIPDLAQCPNIEEVILSHCKKLGQVYSSSFLCKLKCLWLNGCISLRSLHIPSNILLTTSGLIVLHGCRDLEMFSVGNAKMGVQLHGHTVSRHRNIFTALKLREKRSRSPYEKFSNSFDLLDCLKLNTEPKHYMQLLKLEVLRKESPSLFPSLNELCWLDLSYCQFLLSLPTEIFKLKFLKRLYLRGCFNFEDFGEIKETVESLMLLVLDETAIKELPSSLHHLVGLEELSLRYCRKLEMIPSSIGSLGKLSKLDLIGCESLETFPSSIFKLKLTKLDLHCCLMLKTFPEILEPAETFVHINLTKTAIKELPSSMEYLVRLQTLCLNMCTNLVSLPNSIVNLNYLSELDCSGCHSLTEIPNNIGSFSSLRELSLQESSIVNLPESIAHLSSLKSLDLSDCKNLACMPPLPPSLNQLFGYDCPTLGRMMTNSRLELPSNSKKDTFKFHFFNSHELDETACSNIGAESWLRITEDAYRPLFFCFPGSAVPGWFPYRCTGRPVTMKRDSQDWPSNNRLVGFALSVVLGRVDIDDTIPICSSFTYTLTYESDGRTHIVHNFNEINYYFHTKGRSRSVVQNHIFMWKYHLNLSSIGNRLLDAHNFTFGCSKLEYLSSSKSSVIVKEYGICPLYRKEKDENGGNSLRH 1283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04071 1283 ProSiteProfiles TIR domain profile. 20 184 IPR000157 GO:0007165
Vifa6g04071 1283 FunFam Disease resistance protein (TIR-NBS-LRR class) 18 186 - -
Vifa6g04071 1283 Pfam Leucine Rich Repeat 606 625 IPR011713 -
Vifa6g04071 1283 Gene3D - 19 185 IPR035897 -
Vifa6g04071 1283 SUPERFAMILY L domain-like 584 861 - -
Vifa6g04071 1283 Gene3D - 345 433 IPR042197 -
Vifa6g04071 1283 Pfam NB-ARC domain 201 425 IPR002182 GO:0043531
Vifa6g04071 1283 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 696 IPR044974 GO:0006952
Vifa6g04071 1283 Gene3D Ribonuclease Inhibitor 510 724 IPR032675 -
Vifa6g04071 1283 Gene3D Ribonuclease Inhibitor 913 1065 IPR032675 -
Vifa6g04071 1283 SUPERFAMILY RNI-like 785 1063 - -
Vifa6g04071 1283 Gene3D Ribonuclease Inhibitor 757 912 IPR032675 -
Vifa6g04071 1283 PRINTS Disease resistance protein signature 379 393 - -
Vifa6g04071 1283 PRINTS Disease resistance protein signature 220 235 - -
Vifa6g04071 1283 PRINTS Disease resistance protein signature 1028 1044 - -
Vifa6g04071 1283 PRINTS Disease resistance protein signature 286 300 - -
Vifa6g04071 1283 Pfam TIR domain 21 197 IPR000157 GO:0007165
Vifa6g04071 1283 Gene3D - 186 342 IPR027417 -
Vifa6g04071 1283 SMART till_3 21 158 IPR000157 GO:0007165
Vifa6g04071 1283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 439 IPR027417 -
Vifa6g04071 1283 Pfam C-JID domain 1123 1272 IPR045344 -
Vifa6g04071 1283 SUPERFAMILY "Winged helix" DNA-binding domain 416 521 IPR036390 -
Vifa6g04071 1283 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 161 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04071 Vifa-Chr6 1341652947 1341657133 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g04071 796 965 WRKY Transcription Factor Family AT4G12020 36.471 4.01e-16 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g04071 - - ccaj:109803335 1366.67