Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa6g04070 | ATGGAATTTGATGAACAAGAGGAACATGAAGAGGAGATGGAGATTCCGGAAACACCGATGCCGGTGCCGGCGAGTTACGACTCACTCGGAAACTCAGCTTCACGGTCAAAACTCTCCGGTGGAGTTGACGGAAGGAAAGGTAGCGGTAACGGTAACGGTGGAGGTTTTTCCTCGGTGAGGTATAGAGAATGTCAGAAGAATCATGCTGTTAGCTTCGGTGGCCACGCCGTTGACGGTTGCTGCGAGTTCATTTCGGCCGGTGAAGAAGGAACACTTGAAGCTGTGATTTGTGCTGCTTGTAACTGTCACCGGAACTTCCACCGCAAAGAGATCGACGGAGAAACTGTTAGTTCGTGTCAGCGGCAGCAACCTCCACCACCGCCGCAACCATACCACCATCACCAATTTTCACCTTACTACCACCGAGGTCCTCCTTCTACCTCCGGTTACCTCCACCACCACTTAGCGACTCCGGTGGCGCATCACAGACCTTTGGCTCTTCCAGCTTCTGCTTCTGGCGGCGGATTCAGCAGAGAAGATGATGATATTTCAAACCCTAGCAGCAGCGGCGGTGGAGGTAATGGTTCCGGTGGATCAAAGAAGAGATTCAGAACAAAATTCACACAGGAACAAAAAGAGAAACTCTTAGCTTTTGCTGAAGAACACGGTTGGAGAATTCAGAAACAAGATGAAGCTGCTATAGAACAGTTTTGTGCTGAGAATTGTGTGAAGAGAAATGTTCTTAAAGTTTGGATGCATAATAACAAGAACACTCTTGGTAAGAAACCCTAA | 792 | 0.4861 | MEFDEQEEHEEEMEIPETPMPVPASYDSLGNSASRSKLSGGVDGRKGSGNGNGGGFSSVRYRECQKNHAVSFGGHAVDGCCEFISAGEEGTLEAVICAACNCHRNFHRKEIDGETVSSCQRQQPPPPPQPYHHHQFSPYYHRGPPSTSGYLHHHLATPVAHHRPLALPASASGGGFSREDDDISNPSSSGGGGNGSGGSKKRFRTKFTQEQKEKLLAFAEEHGWRIQKQDEAAIEQFCAENCVKRNVLKVWMHNNKNTLGKKP | 263 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa6g04070 | 263 | Gene3D | - | 185 | 260 | - | - | |
Vifa6g04070 | 263 | SUPERFAMILY | Homeodomain-like | 187 | 261 | IPR009057 | - | |
Vifa6g04070 | 263 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 61 | 110 | IPR006456 | - | |
Vifa6g04070 | 263 | MobiDBLite | consensus disorder prediction | 166 | 201 | - | - | |
Vifa6g04070 | 263 | NCBIfam | ZF-HD homeobox protein Cys/His-rich dimerization domain | 60 | 111 | IPR006456 | - | |
Vifa6g04070 | 263 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 40 | 259 | - | - | |
Vifa6g04070 | 263 | MobiDBLite | consensus disorder prediction | 1 | 54 | - | - | |
Vifa6g04070 | 263 | NCBIfam | homeobox domain, ZF-HD class | 200 | 257 | IPR006455 | - | |
Vifa6g04070 | 263 | MobiDBLite | consensus disorder prediction | 114 | 152 | - | - | |
Vifa6g04070 | 263 | Pfam | ZF-HD protein dimerisation region | 59 | 111 | IPR006456 | - | |
Vifa6g04070 | 263 | MobiDBLite | consensus disorder prediction | 181 | 195 | - | - | |
Vifa6g04070 | 263 | FunFam | Zinc-finger homeodomain protein 2 | 190 | 261 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa6g04070 | Vifa-Chr6 | 1341040873 | 1341041664 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa6g04070 | 1 | 259 | ZF-HD Transcription Factor Family | AT4G24660 | 48.473 | 1.12e-63 | 197 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | zf-HD | Vifa6g04070 | ZF-HD_dimer | 9.7e-28 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa6g04070 | - | - | gmx:100776421 | 337.035 |