Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04070 ATGGAATTTGATGAACAAGAGGAACATGAAGAGGAGATGGAGATTCCGGAAACACCGATGCCGGTGCCGGCGAGTTACGACTCACTCGGAAACTCAGCTTCACGGTCAAAACTCTCCGGTGGAGTTGACGGAAGGAAAGGTAGCGGTAACGGTAACGGTGGAGGTTTTTCCTCGGTGAGGTATAGAGAATGTCAGAAGAATCATGCTGTTAGCTTCGGTGGCCACGCCGTTGACGGTTGCTGCGAGTTCATTTCGGCCGGTGAAGAAGGAACACTTGAAGCTGTGATTTGTGCTGCTTGTAACTGTCACCGGAACTTCCACCGCAAAGAGATCGACGGAGAAACTGTTAGTTCGTGTCAGCGGCAGCAACCTCCACCACCGCCGCAACCATACCACCATCACCAATTTTCACCTTACTACCACCGAGGTCCTCCTTCTACCTCCGGTTACCTCCACCACCACTTAGCGACTCCGGTGGCGCATCACAGACCTTTGGCTCTTCCAGCTTCTGCTTCTGGCGGCGGATTCAGCAGAGAAGATGATGATATTTCAAACCCTAGCAGCAGCGGCGGTGGAGGTAATGGTTCCGGTGGATCAAAGAAGAGATTCAGAACAAAATTCACACAGGAACAAAAAGAGAAACTCTTAGCTTTTGCTGAAGAACACGGTTGGAGAATTCAGAAACAAGATGAAGCTGCTATAGAACAGTTTTGTGCTGAGAATTGTGTGAAGAGAAATGTTCTTAAAGTTTGGATGCATAATAACAAGAACACTCTTGGTAAGAAACCCTAA 792 0.4861 MEFDEQEEHEEEMEIPETPMPVPASYDSLGNSASRSKLSGGVDGRKGSGNGNGGGFSSVRYRECQKNHAVSFGGHAVDGCCEFISAGEEGTLEAVICAACNCHRNFHRKEIDGETVSSCQRQQPPPPPQPYHHHQFSPYYHRGPPSTSGYLHHHLATPVAHHRPLALPASASGGGFSREDDDISNPSSSGGGGNGSGGSKKRFRTKFTQEQKEKLLAFAEEHGWRIQKQDEAAIEQFCAENCVKRNVLKVWMHNNKNTLGKKP 263
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04070 263 Gene3D - 185 260 - -
Vifa6g04070 263 SUPERFAMILY Homeodomain-like 187 261 IPR009057 -
Vifa6g04070 263 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 61 110 IPR006456 -
Vifa6g04070 263 MobiDBLite consensus disorder prediction 166 201 - -
Vifa6g04070 263 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 60 111 IPR006456 -
Vifa6g04070 263 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 40 259 - -
Vifa6g04070 263 MobiDBLite consensus disorder prediction 1 54 - -
Vifa6g04070 263 NCBIfam homeobox domain, ZF-HD class 200 257 IPR006455 -
Vifa6g04070 263 MobiDBLite consensus disorder prediction 114 152 - -
Vifa6g04070 263 Pfam ZF-HD protein dimerisation region 59 111 IPR006456 -
Vifa6g04070 263 MobiDBLite consensus disorder prediction 181 195 - -
Vifa6g04070 263 FunFam Zinc-finger homeodomain protein 2 190 261 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vifa6g04070 Vifa-Chr6 1341040873 1341041664 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g04070 1 259 ZF-HD Transcription Factor Family AT4G24660 48.473 1.12e-63 197
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vifa6g04070 ZF-HD_dimer 9.7e-28 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g04070 - - gmx:100776421 337.035