Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04051 ATGGTTTCAAGATCTTATTCAAATCTACTAGAACTAGCTTCTGGTGAGTCTCCAACGTTTGAACATATGAACAGGAGAATTCCTAGGATTATGACTGTTGCTGGTTTGATATCTGATGTTGATAATGATGATGAGCCTTTGGAGAGTGTGTGTTCTGACCCTTCATCTTCGTCTGTCCAAAGAGAAAGGATCATCATCGTGGCTAATCAGTTACCTATAAAGGCTCAGAGGAAGCAAGATGGTGGTGGTAGTAACAGGAGTAATTGGTTTTTCAGTTGGGATGCGAATTCACTTCTGCTTCAACTCAAAGATGGGTTAGGAGATGATGATGTTGAGGTTATTTATGTTGGTTGTCTTCAGGAAGATGTTCATCTAAATGAACAAGATGAGGTTTCACAGATACTACTTGAGAGCTTTAAATGTGTTCCAGTTTTTCTCCCTGGTGATATGTTTACAAGATACTATCATGGCTTTTGCAAGCAACAGTTATGGCCACTGTTTCATTACATGTTACCTTTGTCACCAGACCTTGGTGGTAGGTTCAATAGGTCACTGTGGCAGGCTTATGTATCTGTGAATAAGATATTTGCTGATAGGATTATGGAAGTGATTAACCCTGAAGATGATTATGTTTGGATTCATGATTATCATCTCATGGTTTTGCCAACTTTCTTGAGGAAAAGGTTTAATAGAGTGAAGCTTGGATTTTTTCTACATAGTCCTTTTCCTTCATCAGAAATTTACAAGACATTGCCTATTAGGGAAGAGCTTTTGAGAGCACTTTTGAATTCTGATTTGATTGGTTTCCACACTTTTGACTATGCAAGACATTTTCTCTCATGTTGTAGTAGGTTGCTTGGTCTTACTTATGAATCTAAAAGGGGTAATATTGGGATTGAATATTATGGTAGGACAGTTAGTATCAAAATTCTTCCTGTTGGTATACACATGGGTCAGCTTCAATCAGTTCTAAGCTTATCAAAGACTGAAGAGAAAGTTTCTGAGCTCATAAGACTGTTTTCTGATAATGGAAAGATAATGTTACTTGGTGTGGATGACATGGATATCTTCAAAGGGATGAGTTTGAAGCTACTAGCCATGGAGCAGCTTCTTATTCAGCATCCTGAGTGGCATGGAAAGGTTGTATTGGTTCAGATAGCCAATCCTGCAAGAGGGAAAGGGAGGGATGTAAAGGAAGTTCAAGAAGATACTAAGGCGACTGCGAAGCGGATTAACGAAGCATTCGGTAAACCTGGTTATGATCCTGTCATTCTGATTGAGGAGCCATTAAAGTTTTATGAAAAAGTTGCATATTATGTTGTAGCCGAGTGTTGTTTAGTGACTGCGGTTAGGGACGGAATGAATCTCATACCTTATGAATATATAATCAGTCGTCAAGGGACTGAGAAATTGGATAAAGTTTTGGGAATAGGTTCTTCTCTTAAGAAAAGCATGTTGGTTGTGTCTGAGTTTATTGGTTGTTCACCGTCTTTAAGTGGAGCTATCAGAGTGAATCCATGGAATATTGATGCAGTAGCAGATGCAATGGACTTAGCTTTGGAAATGGCTGATTCAGAGAAACAGCTTAGGCACGAGAAGCATTATAGATATGTTAGTACTCATGATGTCGGTTATTGGGCTCGTAGCTTCTTGCAAGATTTGGAAAGGACTTGTAGTGATCATGTAAGGAGAAGGTGGTGGGGAATTGGTTTTGGATTGAGTTTTAGAGTTGTAGCACTTGATCCAAACTTCAAGAAGCTATCAATGGAGCACATTGTTTCAGCGTATAAGCGGACAAAAACTAGGGCGATCCTTCTAGATTATGATGGTACACTAATGCCTCAGGCTTCCATTGATAAGAGTCCAAACAGTAATTCCATTAAAATGCTTAATAGTTTGTGTAAAGATGAGAACAACATGGTGTTTCTCGTCAGCGCTAAAAGCCGAAAGAAGCTTGCTGAGTGGTTTTCTCCTTGTGAAAATCTGGGAATTGCTGCTGAACATGGTTACTTTTTAAGACTTAAGCGAGATGCAGAATGGGAAACCTGCGGCCCTGTAACAGACTCCAGTTGGAAACAAATTGCTGAGCCTGTGATGAAGCTTTATACCGAAACAACCGATGGATCCACGATTGAAGATAAAGAGACTGCACTTGTTTGGTGCTACGAGGACGCAGATCCAGATTTTGGATCGTGCCAGGCTAAAGAACTTCATAATCATCTGGAAAGCGTGCTTGCAAATGAACCAGTAACAGTGAAGAGTAGCCTGAATAATATAGAGGTTAAACCACAGGGTGTGAACAAGGGGCTTGTGGCTAAACGCCTACTTTCGACCATGCAAGAAAAGGGAATGTCACCTGATTTTGTCCTGTGTATTGGAGACGACCGATCTGATGAAGACATGTTTGAGGTAATCACTAGCTCCGGTCCTTCCATGGCACCCAGGGCTGAAGTATTTGCATGTACTGTTGGTAGAAAACCCAGTAAGGCAAAGTACTATCTGGATGATACTACTGATATAGTGAGAATGGTGCAGGGTTTAGCCTCAGTTTCAGACCGAACAGTTTTATTTTAG 2574 0.4025 MVSRSYSNLLELASGESPTFEHMNRRIPRIMTVAGLISDVDNDDEPLESVCSDPSSSSVQRERIIIVANQLPIKAQRKQDGGGSNRSNWFFSWDANSLLLQLKDGLGDDDVEVIYVGCLQEDVHLNEQDEVSQILLESFKCVPVFLPGDMFTRYYHGFCKQQLWPLFHYMLPLSPDLGGRFNRSLWQAYVSVNKIFADRIMEVINPEDDYVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYKTLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRLLGLTYESKRGNIGIEYYGRTVSIKILPVGIHMGQLQSVLSLSKTEEKVSELIRLFSDNGKIMLLGVDDMDIFKGMSLKLLAMEQLLIQHPEWHGKVVLVQIANPARGKGRDVKEVQEDTKATAKRINEAFGKPGYDPVILIEEPLKFYEKVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGTEKLDKVLGIGSSLKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVADAMDLALEMADSEKQLRHEKHYRYVSTHDVGYWARSFLQDLERTCSDHVRRRWWGIGFGLSFRVVALDPNFKKLSMEHIVSAYKRTKTRAILLDYDGTLMPQASIDKSPNSNSIKMLNSLCKDENNMVFLVSAKSRKKLAEWFSPCENLGIAAEHGYFLRLKRDAEWETCGPVTDSSWKQIAEPVMKLYTETTDGSTIEDKETALVWCYEDADPDFGSCQAKELHNHLESVLANEPVTVKSSLNNIEVKPQGVNKGLVAKRLLSTMQEKGMSPDFVLCIGDDRSDEDMFEVITSSGPSMAPRAEVFACTVGRKPSKAKYYLDDTTDIVRMVQGLASVSDRTVLF 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04051 857 FunFam Trehalose-6-phosphate synthase 10 732 856 - -
Vifa6g04051 857 FunFam Trehalose-6-phosphate synthase 2 685 764 - -
Vifa6g04051 857 Gene3D - 737 855 IPR023214 -
Vifa6g04051 857 Gene3D - 601 736 IPR023214 -
Vifa6g04051 857 CDD GT20_TPS 63 555 IPR001830 GO:0003824|GO:0005992
Vifa6g04051 857 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 29 848 IPR001830 GO:0003824|GO:0005992
Vifa6g04051 857 NCBIfam HAD-IIB family hydrolase 604 805 IPR006379 -
Vifa6g04051 857 NCBIfam trehalose-phosphatase 600 847 IPR003337 GO:0003824|GO:0005992
Vifa6g04051 857 SUPERFAMILY HAD-like 602 847 IPR036412 -
Vifa6g04051 857 Gene3D Glycogen Phosphorylase B; 55 322 - -
Vifa6g04051 857 Pfam Glycosyltransferase family 20 63 555 IPR001830 GO:0003824|GO:0005992
Vifa6g04051 857 CDD HAD_TPP 603 842 - -
Vifa6g04051 857 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 56 321 - -
Vifa6g04051 857 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 601 718 - -
Vifa6g04051 857 FunFam Alpha,alpha-trehalose-phosphate synthase 323 539 - -
Vifa6g04051 857 Pfam Trehalose-phosphatase 605 837 IPR003337 GO:0003824|GO:0005992
Vifa6g04051 857 Gene3D Glycogen Phosphorylase B; 323 539 - -
Vifa6g04051 857 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 63 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04051 Vifa-Chr6 1335851237 1335854690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g04051 1 853 Trehalose Biosynthesis Gene Families AT1G68020 79.306 0.0 1434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g04051 K16055 - cit:102609352 1483