Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04043 ATGACGCCTTCTATCGAGAAATATGGGCTTCCTCAACATTTTCCAGCTAATCTTAGGGTTCTTGTAATAGACCATGACATCACTCTTCTTAATGCTATTGAAAAAACTTGTTTTCAATTCCACTACCAAGTTAAGACATGCTCTAAGGTTTCAGAGGCCTTGGATCTTTTGACAAATACAAATGATTGTTTTGATATGGTACTAATTGAAGCTCAAATGCCTGACATGGATTCCTACGAATTTTTGCAACATGTCACACAAGAAATCAAAATCCCAGTTATTATGATGTGTGTTGATGGATCAACAAATGCTGTGATGAAGAGCATTGTAAAAGGAGCTTGTGATTATTGGATCAAACCTTTGAATGAGAACCAAATCAAAAATATGTGGCAACATGTTGCAAGAAATGTTTTGAAAGAAAATAAAAAACAAGGGAAAATGAATGTACAAGGTAACAAAAATTCAGGGGATGATTATTTAATAACAGAAGATTTTGAAACTCGTAAATATAAGCTGCAAACAGAGAAGTCACGTTTAGCATGGTCACCAGAATTGCATAAAAAATTTATTGACGCAGTGACTGAACTCGGTGCTGATAGGGCTGTACCAAAGAAAATTCAAGAAATAATGAATGTGGATGGATTGACTAGAGGCCATATTGCTAGTCATTTGCAGAAATATAGACAATATTTGAAGAGAGAAAATCTAGAGCAACACATTAGAATTGCTCAAAATATTATGGAATCCAACAATTCCTATGGATATTCTCCAGGATTTAATTATGGTGGTGCTTCTTCTTCTACTCATCACAACCAAAACCAAAATGCATTATTTAAATCACCATCAACATTATGGCAAAACAACAACTCTCCTATAGAACAACTTCCCAACAATATGTTATGGCAGCAACCTCAAGAATATTCACCATCAAGATATGGAACATGGCAACAAGTTCCGATACCGTCGTTAACAACGGCTGCTTTAGGATCTTCTCCTGGTTTTTCTCCTTTTTATGGTGATGTTAACAGTGGAGGAGTCTCCTCCAGTGCTACTGTTGTTGTAGATATTGGTAACTCAACAAGGGTAGAGAATGAGGCGGAGCTGGATTCTATCTATGATTCACTAGAAAATAATATGTTATCTTGA 1146 0.3569 MTPSIEKYGLPQHFPANLRVLVIDHDITLLNAIEKTCFQFHYQVKTCSKVSEALDLLTNTNDCFDMVLIEAQMPDMDSYEFLQHVTQEIKIPVIMMCVDGSTNAVMKSIVKGACDYWIKPLNENQIKNMWQHVARNVLKENKKQGKMNVQGNKNSGDDYLITEDFETRKYKLQTEKSRLAWSPELHKKFIDAVTELGADRAVPKKIQEIMNVDGLTRGHIASHLQKYRQYLKRENLEQHIRIAQNIMESNNSYGYSPGFNYGGASSSTHHNQNQNALFKSPSTLWQNNNSPIEQLPNNMLWQQPQEYSPSRYGTWQQVPIPSLTTAALGSSPGFSPFYGDVNSGGVSSSATVVVDIGNSTRVENEAELDSIYDSLENNMLS 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04043 381 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Vifa6g04043 381 SUPERFAMILY Homeodomain-like 174 233 IPR009057 -
Vifa6g04043 381 CDD REC_typeB_ARR-like 20 134 - -
Vifa6g04043 381 SMART REC_2 18 130 IPR001789 GO:0000160
Vifa6g04043 381 SUPERFAMILY CheY-like 17 140 IPR011006 -
Vifa6g04043 381 Pfam Response regulator receiver domain 20 129 IPR001789 GO:0000160
Vifa6g04043 381 Gene3D - 13 141 - -
Vifa6g04043 381 Gene3D - 173 234 - -
Vifa6g04043 381 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 271 IPR045279 GO:0009736
Vifa6g04043 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 175 232 IPR017930 -
Vifa6g04043 381 NCBIfam myb-like DNA-binding domain, SHAQKYF class 176 229 IPR006447 GO:0003677
Vifa6g04043 381 FunFam Two-component response regulator 172 235 - -
Vifa6g04043 381 Pfam Myb-like DNA-binding domain 179 228 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04043 Vifa-Chr6 1334236949 1334238698 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g04043 14 233 Response Regulator Gene Family AT2G25180 39.167 2.47e-51 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vifa6g04043 Response_reg 2.5e-14 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g04043 - K14491 psat:127101733 574.318