Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04040 ATGCTCACAAGAAGAAAATTCCTCTCCATTTGTTCATCTTCCAACCTTTCTCAACTAATTTCTCACCAATTACAATCAAATGCACTTCCAAATCCAATCCACAACCCTTCCCCACAAATTTCAACCAATTCTAGGGTTTTACTCTTCCATCTCTACGGAACCCAAGATTCAAAATTTCCCGAATACGAGATGCCTACAGTCACATGGGGAGTGATTCAAGGCCGAAAAGAGAAACTCGTTTCGCGTGTCATCATTTTCGATTACCTCAAGGGTTTGGGAATTATCCCTGACGAGTTGCAGGATCTGGAGCTTCCTTCGACTGTCGATGTCATGAGGGAACGCGTCGAGTTTCTTCAGAAACTGGGTATATCGATTGATGATATAAATCAGTATCCTTTAATGTTGGGTTGCAGTGTGAGAAAAAATGTGATTCCTGTTTTAGGGTATTTGGAAAAAATTGGGATTTCTAGGTCTAAGCTTGGTGAGTTTGTTAAGAGTTATCCTCAGGTTTTGCATGCTAGTGTTATTGTTGAGCTTGCTCCTGTTATTAAGTTTCTTAGAGGGCTTGATGTGGAGAAAGATGATATTGGGTTTGTCTTGCACAAATATCCTGAACTTTTAGGGTTTAAGCTTGAAGGGACTATGAGTACTTCTGTGGCTTATCTTGTTAGTATTGGTGTTAATCCTAGGGATATTGGTCCTATGGTTACACAGTATCCTTATCTTTTAGGGATGAGAGTTGGGACTATGATAAAGCCTCTTGTTGATTATTTGGTTGATTTAGGGTTGCCTAAGAAGATTCTAGCTAGGATGTTGGAGAAAAGAGCTTATATACTTGGGTATGATCTTGAAGAGACTGTGAAATGTAATGTTGATTGTTTGATTAGTTTTGGTGTGAGGAGGGAATGTTTGGCTTCGATTATAGCGCAGTATCCGCAGATTATTGGGCTGCCTCTTAAGGCTAAATTGTCTTCGCAGCAATATTTTTTTAGTTTGAAGGTTAAGATTGATCCGGAAGGGTTTGCGAGGGTGGTGGAGAAGATGCCGCAGGTGGTTAGTCTTCACCAGAATGTGATTATGAAGCCGGTTGAGTTTTTACTCGGTAGAGCAATACCGTCGCAAGATGTTGCTAGTATGGTGGTCAAGTGTCCTCAGTTGGTTGCGCTACGAGTTGAGTTAATGAAGAATAGTTATTTCTTCTTCAAAAGTGAGATGGGGAGACCGATAAAAGAGCTTGTGGAGTTTCCTGAATACTTTACTTATAGTCTGGAATCGAGGATTAAACCTAGATACCAGAGGCTTAAGAGCAAGGGGATAAAGTGTTCATTGAATTGGATGCTGAATTGTAGTGACCAGAGATTTGAAGAGAGATTGCAGGGAAGTTATATCGAAACTGAAAGTATAGGTCCTTCATTTTGTATTGGTGGAAAATTAGAGTTACCAGGGAATGACATAGTTTCGGATGAGGAAGAAGAGAGTGATGATGAAATGCTATACAGAAGAACTGTTTCTCTTTAG 1518 0.4005 MLTRRKFLSICSSSNLSQLISHQLQSNALPNPIHNPSPQISTNSRVLLFHLYGTQDSKFPEYEMPTVTWGVIQGRKEKLVSRVIIFDYLKGLGIIPDELQDLELPSTVDVMRERVEFLQKLGISIDDINQYPLMLGCSVRKNVIPVLGYLEKIGISRSKLGEFVKSYPQVLHASVIVELAPVIKFLRGLDVEKDDIGFVLHKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYLLGMRVGTMIKPLVDYLVDLGLPKKILARMLEKRAYILGYDLEETVKCNVDCLISFGVRRECLASIIAQYPQIIGLPLKAKLSSQQYFFSLKVKIDPEGFARVVEKMPQVVSLHQNVIMKPVEFLLGRAIPSQDVASMVVKCPQLVALRVELMKNSYFFFKSEMGRPIKELVEFPEYFTYSLESRIKPRYQRLKSKGIKCSLNWMLNCSDQRFEERLQGSYIETESIGPSFCIGGKLELPGNDIVSDEEEESDDEMLYRRTVSL 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04040 505 Gene3D Transcription termination factor 3, mitochondrial 111 251 IPR038538 -
Vifa6g04040 505 Gene3D Transcription termination factor 3, mitochondrial 252 465 IPR038538 -
Vifa6g04040 505 SMART mt_12 233 264 IPR003690 GO:0003690|GO:0006355
Vifa6g04040 505 SMART mt_12 197 228 IPR003690 GO:0003690|GO:0006355
Vifa6g04040 505 SMART mt_12 125 156 IPR003690 GO:0003690|GO:0006355
Vifa6g04040 505 SMART mt_12 305 337 IPR003690 GO:0003690|GO:0006355
Vifa6g04040 505 SMART mt_12 269 300 IPR003690 GO:0003690|GO:0006355
Vifa6g04040 505 SMART mt_12 377 408 IPR003690 GO:0003690|GO:0006355
Vifa6g04040 505 SMART mt_12 409 440 IPR003690 GO:0003690|GO:0006355
Vifa6g04040 505 SMART mt_12 161 192 IPR003690 GO:0003690|GO:0006355
Vifa6g04040 505 SMART mt_12 342 372 IPR003690 GO:0003690|GO:0006355
Vifa6g04040 505 PANTHER CGI-12 PROTEIN-RELATED 146 460 IPR003690 GO:0003690|GO:0006355
Vifa6g04040 505 FunFam Transcription termination factor MTERF4, chloroplastic 249 463 - -
Vifa6g04040 505 Pfam mTERF 147 455 IPR003690 GO:0003690|GO:0006355
Vifa6g04040 505 FunFam Transcription termination factor mterf4, chloroplastic 111 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04040 Vifa-Chr6 1332731420 1332732937 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vifa6g04040 mTERF 2.5e-107 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g04040 K15032 - gmx:100809590 834.328