Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04029 ATGGGATTTGGCGGTGGTTTGAAGGCGGCGATGTTAATGTCGTCGTCGCTGAGTCACGTACGTCCGATAACGTGCGCTTCGTCGTCGCGGTTAGTGTCGCATCCACACGATCTTGTGAAATGGGTAACAAGAGAAGGTGGTTTTGTGCACCGTGCGGTGAAGATAGCGCAACTTGATTCCGGTGGTTTAGGGCTAGGGTTAGTGGCTAAGGAAGAAATTCCGATTGGTAGTGAACTGATTGTTCTTCCTCAACATCTTCCTTTGCACTTTACGTCTTTTCATCAGGATTCGAATGATGATGAGAACTCTCTGCTACTTCAATTGAGCTCTCATGTTCCTGATGAACTATGGGCAATGAAACTGGGTTTGAAGCTTCTCCGTGAAAGGGCAAAACTTGGATCTTTTTGGTGGCCATATATCAGTAATCTCCCAGAAACATACACTCTCCCTATCTTTTTTCCAGGGGAAGACATCAAGAATTTGCAGTATGCTCCTGTTCTTCACCAGGTAAACAAAAGATGCCGATTTCTTCTTGATTTTGAGAAACAAGTCAAGCGTACGTTAGTTGGTGTTACACCAGATAAGCATCCTTTTGGTGGTCAAGAAGTAGATGCTTCGTCTCTTGGATGGGCGATGTCAGCAGTTTCATCCAGAGCATTCAAGTTGCATGGTAACAAGAATGCAAATGGGATGAACTTTGATATACCAATGATGCTCCCTCTAATTGACATGTGTAATCATAGTTTTGATCCAAATGCTAGAATTGTTCAGGAACAAGAAACCGAAAGCACAGACATGCGGGTGAAGGTTGTGGCCGAGAAAGTAATCAAGGAAGATGACCCTTTATTACTCTGCTACGGATGTTTAAACAATGATCTTTTCCTTCTTGATTACGGATTCGTGATACAATCAAACCCTTATGACTGTATCGAGCTCAGATATGATGGTGCTCTTTTGGAGGCTGCAAGCACGGCAGCTGGAGTTTCTTCACCAAATTTCTCCACACCTGCTCCATGGCAGGAACTTATTTTATCACAACTAAATCTATCCGGAGAAGCTCCTGATCTCAAGGTGAGCTTAGGTGGTGAAGAAATAATCGAAGGCCGATTATTGGCTGCACTGAGAGTACTCCTTGCAAGTGATAAGGAAACTGTACAAAAGTATGACCTCAACACACTCCAGTCATTAGATGCTGAGGCTCCACTTGGTGTTGCAAATGACATTGCTGTATTCCGTACCTTGATCGCTCTCTGTGTCGTTGCACTCGGACACTTTCCGACGAAATTAATGGATGATGAATCTTTATTGAAGCAGGGTGCTTCAGGTTCAACAGAGTTAGCAATTCAGTTCAGAATCCAAAAGAAGTCTATAATTATAGATGTAATGAAAAACCTTGCTAGGAAGGTAAAGCTTCTTTCATCAAATGAGACCGTAACTGCTGAAGGCTAA 1449 0.432 MGFGGGLKAAMLMSSSLSHVRPITCASSSRLVSHPHDLVKWVTREGGFVHRAVKIAQLDSGGLGLGLVAKEEIPIGSELIVLPQHLPLHFTSFHQDSNDDENSLLLQLSSHVPDELWAMKLGLKLLRERAKLGSFWWPYISNLPETYTLPIFFPGEDIKNLQYAPVLHQVNKRCRFLLDFEKQVKRTLVGVTPDKHPFGGQEVDASSLGWAMSAVSSRAFKLHGNKNANGMNFDIPMMLPLIDMCNHSFDPNARIVQEQETESTDMRVKVVAEKVIKEDDPLLLCYGCLNNDLFLLDYGFVIQSNPYDCIELRYDGALLEAASTAAGVSSPNFSTPAPWQELILSQLNLSGEAPDLKVSLGGEEIIEGRLLAALRVLLASDKETVQKYDLNTLQSLDAEAPLGVANDIAVFRTLIALCVVALGHFPTKLMDDESLLKQGASGSTELAIQFRIQKKSIIIDVMKNLARKVKLLSSNETVTAEG 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04029 482 Pfam SET domain 64 287 IPR001214 GO:0005515
Vifa6g04029 482 SMART set_7 51 293 IPR001214 GO:0005515
Vifa6g04029 482 Gene3D set domain protein methyltransferase, domain 1 9 300 - -
Vifa6g04029 482 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 297 476 IPR036464 -
Vifa6g04029 482 ProSiteProfiles SET domain profile. 53 287 IPR001214 GO:0005515
Vifa6g04029 482 CDD SET_LSMT 68 301 - -
Vifa6g04029 482 SUPERFAMILY SET domain 36 305 IPR046341 -
Vifa6g04029 482 FunFam Histone-lysine N-methyltransferase setd3 8 300 - -
Vifa6g04029 482 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 36 444 - -
Vifa6g04029 482 FunFam SET domain containing protein 323 476 - -
Vifa6g04029 482 Pfam Rubisco LSMT substrate-binding 337 458 IPR015353 -
Vifa6g04029 482 Gene3D - 338 477 IPR036464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04029 Vifa-Chr6 1329113656 1329117932 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa6g04029 SET 4.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g04029 - - gmx:100778387 752.666