Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04022 ATGTTTTTTCTACCTGCAGGTAGAAGATGGGGTTTTCCTAGATTTGCTGGTGACTGTGCCAGTGGTATGAAGAAGTATCCTCCAGGAACAATTTTAGAGCACAAGAGTGATATCACTGATTCTTGCTCTCAGATGATACTTCAGCTCCACGATGTCTATGATCCGAATAAGATAAATGTCAGGATTAAAATTATTTCTGGATCACCTTGCGGATCAGTGGCCGCAGAAGCCAAGAAAGGACAAGCCAGTTGGGTTGTTTTAGACAAACATCTCAAACATGAGGAAAAGAGATGCATGGAAGAGTTGCAGTGTAACATTGTTGTTATGAAGCGTACTCAACCGAAAGTGCTTCGTTTGAACTTGATTGGAGCACAAAAGAAGGAAGTTGAAGAAGCTGGTACATCACCTTCTGAGCAAGGTGATATACCTGAAAAACAGTCCGAAAACAAGATGGATTCTGTAGTAGATTCTATCAAAGGACCGAATGTTACTCCGACTAGCAGCCCCGAGCTAGGGACGCCATTCACCGCTACTACTGAAGCCGGTACTTCATCAGCTTCAAGCTCAGATCCTGGAACTTCACCGTTCTGTATTCCAGAGATGAATGGTGAGACGAAGAGAGAAGAAACCATTAAGGAAAGTCATGAACTTTGTGATACATCAGACACAGAAAGTGAAAGTCTGTCGACATCTTCGACTAGCTTTAGATACCAACCGTGGATCACAGAATTGCTTTTACATCAACAATCATCTCAACGCAACGGAGAAAGATCAGAGGCGTATCATGGTATGCCTCAGGCAACTACAACCAAGGCTTTGCTAGAAAAGTATTCTAGGCTTGATAGAGGAGCTAGAATGGAAATGTCGGCAGCATATAGAAATGACTCGGATTTTAGTGGTAATTTAAGAGAAGCGATAGCATTATCAGGAAATGCTCCACTTGGTCCACCTCCATTGTGTTCGATATGTCAACACAAGGCACTTGTTTTTGGAAAACCTCCAAGGTGGTTCAGCTATGCTGAGTTGGAACTCGCTACCGGGGGATTTTCACAAGCCAACTTCTTGGCAGAAGGAGGGTATGGATCGGTTCATCGAGGGGTTCTACCAGAAGGACAAGTCATTGCTGTCAAGCAACATAAATTGGCTAGTTCTCAAGGTGATGTCGAGTTTTGCTCTGAAGTAGAAGTCCTGAGCTGTGCTCAGCACCGAAATGTTGTTATGCTGATTGGATTCTGTATAGAGGATAAGAGAAGGCTTCTGGTTTACGAGTACACATGCAATGGATCATTGGATTCACATTTATATGGGCGACAAAGAGATCCATTAGAATGGTCTGCGAGGCAGAAAATTGCTGTTGGAGCTGCTCGCGGGTTAAGGTATCTTCACGAAGAGTGCAGAGTTGGTTGTATCATCCACCGCGACATGAGGCCGAACAACATTCTCATAACTCATGATTTTGAACCTCTGGTTGGTGATTTTGGATTGGCAAGGTGGCAACCTGATGGAGACATGGGTGTGGATACTAGAGTAATTGGAACATTTGGGTATTTGGCTCCTGAATATGCTCAAAGCGGCCAAATCACCGAAAAAGCCGATGTTTATTCCTTTGGGGTGGTATTGGTGGAGCTTGTTACCGGTAGAAAAGCTGTCGATCTCACTCGGCCAAAGGGACAACAGTGCCTAACTGAGTGGGCCCGGCCACTGTTAGAAGAATATGCCATTGACGAACTGATTGACCCGAGACTTGGACGTCTCTATTTAGAACATGAAGTCTATTGCATGTTGCATGCTGCTTCATTATGCATAAGGAGAGATCCTCATTGTAGACCACGCATGTCACAGGTTCTCCGAATTCTAGAGGGAGACATGGTGATGGACACAAATTACATTTCAACTCCGGGCTATGATGTCGGAAATAAAAGTGGTCGCATTTGGTCAGAGCCACTGCAGAGACAGCATCATTACAACGGTCCCCTCTTAGAAGATTCATTAGAGTCATCATTCAGTGGAAAGCTATCTCGTGACAAGTACAAACCTTTCTATTGGGATAGGAGTAGGGACAAGCCTTAA 2070 0.4425 MFFLPAGRRWGFPRFAGDCASGMKKYPPGTILEHKSDITDSCSQMILQLHDVYDPNKINVRIKIISGSPCGSVAAEAKKGQASWVVLDKHLKHEEKRCMEELQCNIVVMKRTQPKVLRLNLIGAQKKEVEEAGTSPSEQGDIPEKQSENKMDSVVDSIKGPNVTPTSSPELGTPFTATTEAGTSSASSSDPGTSPFCIPEMNGETKREETIKESHELCDTSDTESESLSTSSTSFRYQPWITELLLHQQSSQRNGERSEAYHGMPQATTTKALLEKYSRLDRGARMEMSAAYRNDSDFSGNLREAIALSGNAPLGPPPLCSICQHKALVFGKPPRWFSYAELELATGGFSQANFLAEGGYGSVHRGVLPEGQVIAVKQHKLASSQGDVEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYTCNGSLDSHLYGRQRDPLEWSARQKIAVGAARGLRYLHEECRVGCIIHRDMRPNNILITHDFEPLVGDFGLARWQPDGDMGVDTRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLTRPKGQQCLTEWARPLLEEYAIDELIDPRLGRLYLEHEVYCMLHAASLCIRRDPHCRPRMSQVLRILEGDMVMDTNYISTPGYDVGNKSGRIWSEPLQRQHHYNGPLLEDSLESSFSGKLSRDKYKPFYWDRSRDKP 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04022 689 ProSitePatterns Tyrosine protein kinases specific active-site signature. 470 482 IPR008266 GO:0004672|GO:0006468
Vifa6g04022 689 Gene3D Phosphorylase Kinase; domain 1 321 424 - -
Vifa6g04022 689 SUPERFAMILY Protein kinase-like (PK-like) 333 627 IPR011009 -
Vifa6g04022 689 ProSiteProfiles Protein kinase domain profile. 349 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g04022 689 MobiDBLite consensus disorder prediction 159 195 - -
Vifa6g04022 689 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 425 628 - -
Vifa6g04022 689 Gene3D Transferase(Phosphotransferase) domain 1 426 631 - -
Vifa6g04022 689 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 321 424 - -
Vifa6g04022 689 Pfam Protein tyrosine and serine/threonine kinase 353 616 IPR001245 GO:0004672|GO:0006468
Vifa6g04022 689 PANTHER OS01G0750732 PROTEIN 266 627 - -
Vifa6g04022 689 MobiDBLite consensus disorder prediction 127 200 - -
Vifa6g04022 689 CDD STKc_IRAK 355 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04022 Vifa-Chr6 1327191231 1327194483 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g04022 288 615 Trihelix Transcription Factor Family AT1G68690 49.699 2.28e-100 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vifa6g04022 PK_Tyr_Ser-Thr 2.3e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g04022 - - cam:101503019 1205.28