Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04021 ATGTTTTTTCTACCTGCAGGTAGAAGATGGGGTTTTCCTAGATTTGCTGGTGACTGTGCCAGTGGTATGAAGAAGTATCCTCCAGGAACAATTTTAGAGCACAAGAGTGATATCACTGATTCTTGCTCTCAGATGATACTTCAGCTCCACGATGTCTATGATCCGAATAAGATAAATGTCAGGATTAAAATTATTTCTGGATCACCTTGCGGATCAGTGGCCGCAGAAGCCAAGAAAGGACAAGCCAGTTGGGTTGTTTTAGACAAACATCTCAAACATGAGGAAAAGAGATGCATGGAAGAGTTGCAGTGTAACATTGTTGTTATGAAGCGTACTCAACCGAAAGTGCTTCGTTTGAACTTGATTGGAGCACAAAAGAAGGAAGTTGAAGAAGCTGGTACATCACCTTCTGAGCAAGGTGATATACCTGAAAAACAGTCCGAAAACAAGATGGATTCTGTAGTAGATTCTATCAAAGGACCGAATGTTACTCCGACTAGCAGCCCCGAGCTAGGGACGCCATTCACCGCTACTACTGAAGCCGGTACTTCATCAGCTTCAAGCTCAGATCCTGGAACTTCACCGTTCTGTATTCCAGAGATGAATGGTGAGACGAAGAGAGAAGAAACCATTAAGGAAAGTCATGAACTTTGTGATACATCAGACACAGAAAGTGAAAGTCTGTCGACATCTTCGACTAGCTTTAGATACCAACCGTGGATCACAGAATTGCTTTTACATCAACAATCATCTCAACGCAACGGAGAAAGATCAGAGGCGTATCATGGTATGCCTCAGGCAACTACAACCAAGGCTTTGCTAGAAAAGTATTCTAGGCTTGATAGAGGAGCTAGAATGGAAATGTCGGCAGCATATAGAAATGACTCGGATTTTAGTGGTAATTTAAGAGAAGCGATAGCATTATCAGGAAATGCTCCACTTGGTCCACCTCCATTGTGTTCGATATGTCAACACAAGGCACTTGTTTTTGGAAAACCTCCAAGGTGGTTCAGCTATGCTGAGTTGGAACTCGCTACCGGGGGATTTTCACAAGCCAACTTCTTGGCAGAAGGAGGGTATGGATCGGTTCATCGAGGGGTTCTACCAGAAGGACAAGTCATTGCTGTCAAGCAACATAAATTGGCTAGTTCTCAAGAGGATAAGAGAAGGCTTCTGGTTTACGAGTACACATGCAATGGATCATTGGATTCACATTTATATGGGCGACAAAGAGATCCATTAGAATGGTCTGCGAGGCAGAAAATTGCTGTTGGAGCTGCTCGCGGGTTAAGGTATCTTCACGAAGAGTGCAGAGTTGGTTGTATCATCCACCGCGACATGAGGCCGAACAACATTCTCATAACTCATGATTTTGAACCTCTGGTTGGTGATTTTGGATTGGCAAGGTGGCAACCTGATGGAGACATGGGTGTGGATACTAGAGTAATTGGAACATTTGGGTATTTGGCTCCTGAATATGCTCAAAGCGGCCAAATCACCGAAAAAGCCGATGTTTATTCCTTTGGGGTGGTATTGGTGGAGCTTGTTACCGGTAGAAAAGCTGTCGATCTCACTCGGCCAAAGGGACAACAGTGCCTAACTGAGTGGGCCCGGCCACTGTTAGAAGAATATGCCATTGACGAACTGATTGACCCGAGACTTGGACGTCTCTATTTAGAACATGAAGTCTATTGCATGTTGCATGCTGCTTCATTATGCATAAGGAGAGATCCTCATTGTAGACCACGCATGTCACAGGTTCTCCGAATTCTAGAGGGAGACATGGTGATGGACACAAATTACATTTCAACTCCGGGCTATGATGTCGGAAATAAAAGTGGTCGCATTTGGTCAGAGCCACTGCAGAGACAGCATCATTACAACGGTCCCCTCTTAGAAGATTCATTAGAGTCATCATTCAGTGGAAAGCTATCTCGTGACAAGTACAAACCTTTCTATTGGGATAGGAGTAGGGACAAGCCTTAA 1986 0.4426 MFFLPAGRRWGFPRFAGDCASGMKKYPPGTILEHKSDITDSCSQMILQLHDVYDPNKINVRIKIISGSPCGSVAAEAKKGQASWVVLDKHLKHEEKRCMEELQCNIVVMKRTQPKVLRLNLIGAQKKEVEEAGTSPSEQGDIPEKQSENKMDSVVDSIKGPNVTPTSSPELGTPFTATTEAGTSSASSSDPGTSPFCIPEMNGETKREETIKESHELCDTSDTESESLSTSSTSFRYQPWITELLLHQQSSQRNGERSEAYHGMPQATTTKALLEKYSRLDRGARMEMSAAYRNDSDFSGNLREAIALSGNAPLGPPPLCSICQHKALVFGKPPRWFSYAELELATGGFSQANFLAEGGYGSVHRGVLPEGQVIAVKQHKLASSQEDKRRLLVYEYTCNGSLDSHLYGRQRDPLEWSARQKIAVGAARGLRYLHEECRVGCIIHRDMRPNNILITHDFEPLVGDFGLARWQPDGDMGVDTRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLTRPKGQQCLTEWARPLLEEYAIDELIDPRLGRLYLEHEVYCMLHAASLCIRRDPHCRPRMSQVLRILEGDMVMDTNYISTPGYDVGNKSGRIWSEPLQRQHHYNGPLLEDSLESSFSGKLSRDKYKPFYWDRSRDKP 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04021 661 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 321 390 - -
Vifa6g04021 661 PANTHER OS01G0750732 PROTEIN 262 599 - -
Vifa6g04021 661 MobiDBLite consensus disorder prediction 159 195 - -
Vifa6g04021 661 Pfam Protein kinase domain 384 528 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g04021 661 ProSiteProfiles Protein kinase domain profile. 274 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g04021 661 Gene3D Phosphorylase Kinase; domain 1 323 396 - -
Vifa6g04021 661 SUPERFAMILY Protein kinase-like (PK-like) 333 599 IPR011009 -
Vifa6g04021 661 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 397 600 - -
Vifa6g04021 661 Gene3D Transferase(Phosphotransferase) domain 1 398 603 - -
Vifa6g04021 661 ProSitePatterns Tyrosine protein kinases specific active-site signature. 442 454 IPR008266 GO:0004672|GO:0006468
Vifa6g04021 661 MobiDBLite consensus disorder prediction 127 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04021 Vifa-Chr6 1327191231 1327194483 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g04021 288 587 Trihelix Transcription Factor Family AT1G68690 45.482 9.49e-85 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vifa6g04021 Pkinase 4.1e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g04021 - - cam:101503019 1132.86