Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03995 ATGGATAAACTCTTATTCAATTGTTTCATTGCATACTTTCTCTTTTTTTCTCCCTTGTTTGTTCATGCTAAAGAATTATCATGCAATCAAACACCATACCCTCATGTTTGCAACCATTACATTGGAACTACTAATACACTATCAACCCTAGATTCTTCTTCATTCCATGATATTGCCATTAAGGTTACCATGTCCGAAGCTATTGAAGCATACAAACTTGTGTCAACCATGGATTTGAATAACTTCAAAGACAATAGAGCCAAGTTAGCATGGGAAGATTGTGTAGAGCTTTATGAGGATACGATTTATCAACTTAATCGTTCCATAAACTCAAACAATTTAAATGACAAATTAACATGGCAAAGTGCTTCCATTACCAATCATCAAACTTGTCAAAATGGTTTCATTGATTTCAACCTTCCCTCTCACTTAAACTACTTCCCCTCCATGTTAACCAACTTTACTAAATTGCTTAGCAACTCCTTGTCCATTAGCAACACTCTAGCCTCCATCCCAAGCATGAAACAAAATGGAGGGAGAAGATTGTTATCAGATGGATTTCCACATTGGCTTTCAGGTTCAGATAGAAAGCTTCTGCAGACAACACCAAGTGCTGATATTGTGGTGGCACAAGATGGAAGTGGGAACTATAAGACAATCTCAGAAGGTGTAGCCGCTGCTTCTAAGCTTAGTGGAAAAGGAAGAGTTGTTATTCATGTGAAAGCCGGAGTATACAAAGAGAACATTGATATAAAAAAGACAGTTAAGAACATAATGATATTTGGAGATGGAATGGATTCAACAATTGTTACCGGTAATCATAACACTCAAGATGGTTCTACCACTTTTCGTTCAGCTACTTTTGCGGTAATGGGAGATGGTTTCGTAGCAAAAGATATGACGTTCGAGAACACTGCCGGACCACAGAAGCACCAAGCGGTGGCTCTCCGTTCCGGCGCGGATCACTCGGTTTTCTACCGCTGCTCCTTCAAAGGCTACCAAGACACTCTATATGTTTACGCCACCCGTCAATTCTACCGCGACTGTAACATCTACGGAACAGTCGATTTCATCTTCGGTAACGCAGTGACTGTTCTTCAAAACTGCAACATCTTAGTTAGAAAACCGATGAGCAACCAACAGAACACCGTAACGGCACAAGGAAGAACAGATCCAAACGAGAACACCGGAATAGTGATCCATAACTGCCGAATAACCGCCGCGGGTGATTTGAAACCAAGTCAGAATTCAGTGAAAAGTTATCTGGGTAGACCGTGGCAGAAGTATTCAAGAACGGTAGTCATGAAAAGTAACATTGATGGAGTTATAAACTCACAAGGTTGGGCTCCATGGAGTGGTGGTTTTGCTTTGAGCACACTGTATTATGGTGAATATATGAATGTTGGTGATGGTGCTAATACAAAAGGGAGAGTGAATTGGCCTGGTTTTCATGTTATCACAAATCCTTCTGAAGCAGTTAAATTTTCTGTTAGTAACTTTTTAGCCGGTGAATCATGGATTTCTGGTAGTGGTGTGCCGTTTGATGCAGGCTTGTGA 1557 0.4046 MDKLLFNCFIAYFLFFSPLFVHAKELSCNQTPYPHVCNHYIGTTNTLSTLDSSSFHDIAIKVTMSEAIEAYKLVSTMDLNNFKDNRAKLAWEDCVELYEDTIYQLNRSINSNNLNDKLTWQSASITNHQTCQNGFIDFNLPSHLNYFPSMLTNFTKLLSNSLSISNTLASIPSMKQNGGRRLLSDGFPHWLSGSDRKLLQTTPSADIVVAQDGSGNYKTISEGVAAASKLSGKGRVVIHVKAGVYKENIDIKKTVKNIMIFGDGMDSTIVTGNHNTQDGSTTFRSATFAVMGDGFVAKDMTFENTAGPQKHQAVALRSGADHSVFYRCSFKGYQDTLYVYATRQFYRDCNIYGTVDFIFGNAVTVLQNCNILVRKPMSNQQNTVTAQGRTDPNENTGIVIHNCRITAAGDLKPSQNSVKSYLGRPWQKYSRTVVMKSNIDGVINSQGWAPWSGGFALSTLYYGEYMNVGDGANTKGRVNWPGFHVITNPSEAVKFSVSNFLAGESWISGSGVPFDAGL 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03995 518 FunFam Pectinesterase 25 168 - -
Vifa6g03995 518 Pfam Plant invertase/pectin methylesterase inhibitor 27 164 IPR006501 GO:0004857
Vifa6g03995 518 CDD PMEI-like_3 26 170 - -
Vifa6g03995 518 SUPERFAMILY Pectin lyase-like 201 517 IPR011050 -
Vifa6g03995 518 Pfam Pectinesterase 206 503 IPR000070 GO:0030599|GO:0042545
Vifa6g03995 518 ProSitePatterns Pectinesterase signature 1. 232 251 IPR018040 -
Vifa6g03995 518 SMART PMEI_2 21 164 IPR006501 GO:0004857
Vifa6g03995 518 Gene3D - 200 518 IPR012334 -
Vifa6g03995 518 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 169 IPR035513 -
Vifa6g03995 518 ProSitePatterns Pectinesterase signature 2. 351 360 IPR033131 -
Vifa6g03995 518 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 169 IPR035513 -
Vifa6g03995 518 NCBIfam pectinesterase inhibitor domain 27 168 IPR006501 GO:0004857
Vifa6g03995 518 FunFam Pectinesterase 200 518 - -
Vifa6g03995 518 PANTHER PECTINESTERASE 23 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03995 Vifa-Chr6 1317244531 1317246220 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03995 27 518 Carbohydrate Esterase AT1G23200 52.462 0.0 538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03995 - - gmx:100775898 833.172