Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03994 ATGAATAAACTCTTATTCAATTGTTTCATTGCATACTTTCTCTTTTTTTCTCTCTTGTTTGTGCATGCCAAAGAATTATCATGCAATCAAACACCATACCCTCATGTATGTAACCATTACATTGGAACCACTAACACACTCTCAACCATTGATTCTTCTTCATTCCATGATATTTCCATTAAGGTTACCATGGACCAAGCTATTGAAGCATACAAACTTGTGTCAACCATGGATTTGAATGATTTCAAAGACAATAGAGCCAAGTCAGCATGGGAAGATTGTGTTGAGCTTTATGAGGATACAATTTATCAACTTAATCGCTCCATAAACTCAAAAAACTTAAATGACAAATTAACATGGCAAAGTGCTTCCATTACCAATCATGAAACTTGTCAAAATGGTTTCATTGATTTCAACCTTCCCTCTCACTTAAACTACTTCCCCTCCATGTTAACCAACTTTACTAAATTGCTTAGCAACTCCTTGTCCATTAGCAACACTCTAGCCTCCATCCCAAGCATGAAACAAAATGGAGGGAGAAGATTGTTATCAGATGGATTTCCACATTGGCTTTCAGGTTCCGATAGAAAGCTTCTTCAAGCAACACCAAGTGCTGATATTGTGGTGGCACAAGATGGAAGTGGGAACTATAAGACAATCTCAGAAGGTGTAGCCGCTGCTTCTAAGCTTAGTGGAAAAGGAAGAGTTGTTATTCATGTGAAAGCAGGAGTATACAAAGAGAACATTGATATAAAAAAGACAGTTAAGAACATAATGATATTTGGAGATGGAATGGATTCAACAATTGTTACCGGTAATCATAACACTCAAGATGGTTCTACCACTTTTCGTTCAGCTACTTTTGCGGTAATGGGAGATGGTTTCATAGCAAAAGATATGACGTTCGAGAACACTGCCGGACCACAGAAGCACCAAGCGGTGGCTCTCCGTTCCGGCGCCGATCACTCGGTTTTCTACCGCTGCTCCTTCAAAGGCTACCAAGACACTCTATATGTTTACGCCACCCGTCAATTCTACCGCGACTGTAACATCTACGGAACAGTCGATTTCATCTTCGGTAACGCAGTGACTGTTCTTCAAAACTGCAACATCTTAGTTAGAAAACCGATGAGCAACCAACAGAACACCGTAACGGCACAAGGAAGAACAGATCCAAACGAGAACACCGGAATAGTGATCCATAACTGCCAAATAACCGCCGCAGGTGATTTGAAACCAAGTCAGAATTCAGTGAAAAGTTATCTGGGAAGACCGTGGCAGAAGTATTCAAGAACGGTAGTCATGAAAAGTAACATTGATGGAGTTATAAACTCACAAGGTTGGGCTCCATGGAGTGGTGGTTTTGCTTTGAGCACACTGTATTATGGTGAATATATGAATGTTGGTGATGGTGCTAATACAAATGGGAGAGTGAATTGGCCTGGTTTTCATGTTATCACAAATCCTTCTGAAGCAGTTAAATTTTCTGTTAGTAACTTTTTAGCGGGTGAATCTTGGATTTCTGGTGTACCGTTCGATGCAGGCTTATGA 1551 0.4017 MNKLLFNCFIAYFLFFSLLFVHAKELSCNQTPYPHVCNHYIGTTNTLSTIDSSSFHDISIKVTMDQAIEAYKLVSTMDLNDFKDNRAKSAWEDCVELYEDTIYQLNRSINSKNLNDKLTWQSASITNHETCQNGFIDFNLPSHLNYFPSMLTNFTKLLSNSLSISNTLASIPSMKQNGGRRLLSDGFPHWLSGSDRKLLQATPSADIVVAQDGSGNYKTISEGVAAASKLSGKGRVVIHVKAGVYKENIDIKKTVKNIMIFGDGMDSTIVTGNHNTQDGSTTFRSATFAVMGDGFIAKDMTFENTAGPQKHQAVALRSGADHSVFYRCSFKGYQDTLYVYATRQFYRDCNIYGTVDFIFGNAVTVLQNCNILVRKPMSNQQNTVTAQGRTDPNENTGIVIHNCQITAAGDLKPSQNSVKSYLGRPWQKYSRTVVMKSNIDGVINSQGWAPWSGGFALSTLYYGEYMNVGDGANTNGRVNWPGFHVITNPSEAVKFSVSNFLAGESWISGVPFDAGL 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03994 516 CDD PMEI-like_3 26 170 - -
Vifa6g03994 516 ProSitePatterns Pectinesterase signature 1. 232 251 IPR018040 -
Vifa6g03994 516 FunFam Pectinesterase 25 168 - -
Vifa6g03994 516 Gene3D - 200 516 IPR012334 -
Vifa6g03994 516 FunFam Pectinesterase 200 516 - -
Vifa6g03994 516 ProSitePatterns Pectinesterase signature 2. 351 360 IPR033131 -
Vifa6g03994 516 Pfam Pectinesterase 206 503 IPR000070 GO:0030599|GO:0042545
Vifa6g03994 516 SMART PMEI_2 21 164 IPR006501 GO:0004857
Vifa6g03994 516 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 170 IPR035513 -
Vifa6g03994 516 Pfam Plant invertase/pectin methylesterase inhibitor 27 164 IPR006501 GO:0004857
Vifa6g03994 516 PANTHER PECTINESTERASE 18 508 - -
Vifa6g03994 516 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 169 IPR035513 -
Vifa6g03994 516 SUPERFAMILY Pectin lyase-like 201 510 IPR011050 -
Vifa6g03994 516 NCBIfam pectinesterase inhibitor domain 25 168 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03994 Vifa-Chr6 1317059092 1317060775 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03994 4 516 Carbohydrate Esterase AT1G23200 51.449 0.0 538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03994 - - gmx:100775898 826.239