Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03991 ATGACTACCTTCCTCTTCCTTGCATCCATATTCTTCACCATTGTTTTCTTCTCAACAACTTTGCCACAATCAAACTCTCAAAAAAACGACACATTTTCTACTTGCAGCCAATCCTATTTCACATGTGGAACAGACACAAATGTATCGTTTCCTTTCTGGGGAAAGAATCGACCGAATTTTTGCGGCAAAAATGAGTTCAAACTCATTTGCATGCATGATGAAAACACCTCTATTCAAATTGGTTCACAAAGATTCAATGTCCTAAACATTAACCAAAGTGCTTCCACCATGAGAATAGCTAGAGAAAATCTTGTCAATGATATATGTTCTTCAAATTTCACCAACACTTCTTTGATTAGAACTCCCTTTAGTTTTCTTCCATCTGTTCGAAATCTCACTATATTCTATGATTGTCCTATTGAGAGTAGTTCAGTTATGAAAAACATAAACACTTTTACATGTGAGAAAAATGGTAGCAATGGACATGTTTTCTATGTGGTCAACAATGAAACTCAGCTACAAAACCAGCTCTTAGGATTTCGGAACTGTCGTGTAAGTTTTCAAGTTGAAGTTTCTGAAGATGTTGTTTGGGATTCTGAGAGAGGAGTTCATACGCTGGAACAAGGATTTGATGTGAAGTATGATGCAGGTGTAGGGTGGTCCTCTCAGTGTGAGGGTTGTAGAGAATCTGGAGGAACATGTGGTACGAATCAGAATGATTCTTCCAATTTTTTTTGTTACTGTCCTTCTGGAAGTGGAACTCATGATGCTGCAAAGTGTTCTTCTTCTCACAAAAGTAGTAAGAAGACCAAAGTGTTGAAACTGGTTATAGGTTTCATAGCTACTGGAATGTTATTACCACTTATTGCTGTCATAATATGTCGAAATAAAGCGAAAATATGGAAGGTTATATTGACACAATTCAGCAAAATAACAAGGAATAATCAACATATAGAAGCCTTTCTTGAGAGCCAAGGTCCTTTGAATCTAAAAAGATACAAATACTCTGATGTAAAGAGAATGACTGAATCTTTCAAAGTTAAACTCGGAGAAGGTGGTTATGGTTCGGTGTACAAAGGAAATATCAATGGTTGTCTTGTTGCTGTGAAAGTATTGAATGAATCAAAAGGGAATGGTGAAGATTTCATCAATGAAGTTGCTAGTATATGCAAAACATCGCATGTTAATGTTGTCACACTTTTAGGATTTTGTCTTGATGGAACCAAAAAAGCTCTTATCTATGAATTTATGCCAAATGGTTCGCTCGAAAAGTATATTCATAATTCCAACAAAGAATCCAAGGCGACTGAAAAGACTAAAACTAGTCCTAATCCGTCGTTGAGTTGGGAGAATTTGCACCAGATTGCGATAGGGATCGCGCGAGGATTAGAGTACTTGCATAAAGGATGTAATACTCGGATTCTACATTTTGATATTAAACCACATAACATTCTTCTGGACGAAACGTATCGTCCGAAGATATCAGATTTTGGACTTGCTAAACTAAGCACGAGGGACGAGAGTGTTATTTCGATGTCAAACGCTAGAGGGACGGTCGGGTATGTAGCACCTGAAGTTTTCAACAAAAGCTTCGGAGGTGTATCGCATAAGTCTGATGTTTATAGTTACGGAATGATGTTGCTTGAAATGATTGGAGGACGGAAGAATGTTAACATTGTTGAAGCAAGTAGTCAGTCTAGCGAGTTATATTTTCCGCATTTGGTGATTTACAAGAAGCTTGAAGATGGGAATGATTTGGAACTTGATGACGAGGTAATGTCGAATGAGGAAAATGAGATAGCTAAGAAATTGACTATGGTTGGTTTATGGTGCATTCAAACAATTCCAACTCATAGGCCTACAATAAGTAGGGTTATTGATATGTTGGAAGGTAGCATGGATTCTTTGGAAATGCCACCAAAACCTGTTATGTTTTCTCCTCCAAGATCAATACCGGAATTTTCAACATCATCAAAATCATTGGAAAGTTTCTCAAGTTAA 2001 0.3713 MTTFLFLASIFFTIVFFSTTLPQSNSQKNDTFSTCSQSYFTCGTDTNVSFPFWGKNRPNFCGKNEFKLICMHDENTSIQIGSQRFNVLNINQSASTMRIARENLVNDICSSNFTNTSLIRTPFSFLPSVRNLTIFYDCPIESSSVMKNINTFTCEKNGSNGHVFYVVNNETQLQNQLLGFRNCRVSFQVEVSEDVVWDSERGVHTLEQGFDVKYDAGVGWSSQCEGCRESGGTCGTNQNDSSNFFCYCPSGSGTHDAAKCSSSHKSSKKTKVLKLVIGFIATGMLLPLIAVIICRNKAKIWKVILTQFSKITRNNQHIEAFLESQGPLNLKRYKYSDVKRMTESFKVKLGEGGYGSVYKGNINGCLVAVKVLNESKGNGEDFINEVASICKTSHVNVVTLLGFCLDGTKKALIYEFMPNGSLEKYIHNSNKESKATEKTKTSPNPSLSWENLHQIAIGIARGLEYLHKGCNTRILHFDIKPHNILLDETYRPKISDFGLAKLSTRDESVISMSNARGTVGYVAPEVFNKSFGGVSHKSDVYSYGMMLLEMIGGRKNVNIVEASSQSSELYFPHLVIYKKLEDGNDLELDDEVMSNEENEIAKKLTMVGLWCIQTIPTHRPTISRVIDMLEGSMDSLEMPPKPVMFSPPRSIPEFSTSSKSLESFSS 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03991 666 ProSiteProfiles Protein kinase domain profile. 343 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g03991 666 SMART serkin_6 343 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g03991 666 Pfam Wall-associated receptor kinase galacturonan-binding 35 101 IPR025287 GO:0030247
Vifa6g03991 666 SUPERFAMILY Protein kinase-like (PK-like) 323 630 IPR011009 -
Vifa6g03991 666 Pfam Wall-associated receptor kinase C-terminal 154 250 IPR032872 -
Vifa6g03991 666 FunFam PR5-like receptor kinase 417 641 - -
Vifa6g03991 666 PANTHER RUST RESISTANCE KINASE LR10-RELATED 310 651 IPR045874 GO:0004672
Vifa6g03991 666 ProSitePatterns Protein kinases ATP-binding region signature. 349 370 IPR017441 GO:0005524
Vifa6g03991 666 Gene3D Transferase(Phosphotransferase) domain 1 417 639 - -
Vifa6g03991 666 MobiDBLite consensus disorder prediction 650 666 - -
Vifa6g03991 666 Gene3D Phosphorylase Kinase; domain 1 317 416 - -
Vifa6g03991 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Vifa6g03991 666 MobiDBLite consensus disorder prediction 647 666 - -
Vifa6g03991 666 Pfam Protein kinase domain 346 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03991 Vifa-Chr6 1315421518 1315430694 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03991 9 659 Receptor kinase-like Gene Family AT5G38260 38.578 3.06e-143 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vifa6g03991 Pkinase 2.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03991 - - gmx:100816285 882.863