Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03984 ATGGCTGCTAAACGTCTTTTGGATGATTCTGATCAAGACAAACACAAACGTATCAGAACTACAACAACTCCTTTTGCTTCGGCAATAGGAGAAATAGTTATGGTGAAAAACATGCAAAACCTTTTCTCTGGCTTGGAACCATTACTTAGAAGAGTGGTGAACGAAGAAGTGGAGCGAGCAATGAGACAATGTTATCCACCGCGATCAATAACAAGATCACCTTCATTGAGACTTCAAGCAATGGAACATCCATCAAGTTTTCAATTCATTTTCAAAAAGAAGCTTTCACTTTCAATATTCACCGGTAGTAGATTATTAGACATGGATGGAAACTCAATCAATGTGATTCTTGTTGACAAAAGCAATGGCCAAAATGTCCCTACAAGTCTACCTCATCCAATCAAGATAGAAATTGTAGTTCTTGATGGAGATTTTCCATCTAGTGAAAAGGAATCATCATGGACTAGTGAAGAATTCAATAGTAATATTGTGAAAGAAAGAACCGGGAAGAGGCCATTGCTTACTGGAGAATTGAATCTTACTATGAGAGATGGAATTGCACCAATTGGGGATATTGAGTTCACCGATAATTCAAGCTGGACTCGTAGCAGAAAGTTTAGACTTGGTGTAAGAGTTGTGCCAGGGACTAATCAAAATGTTCAAATTCGTGAAGGCATGACTGAGCCTTTTGTTGTTAAGGATCATCGCGGAGAATTGTACAAGAAACACCATCCACCAAGTCTAAATGATGAAGTGTGGCGTTTAGAGAAGATCGGAAAAGATGGAGCATTCCACAAAAAATTGACTTTGGCAAAGATTACAACGGTTCAAGAGTTTCTCAAATTATCTGTAATTGATCCTCAACGACTCCGAAAGATATTAGGCATTGCAATGTCAGAGAAAATGTGGGATGCAACAATGAAACATGCAAAGAGTTGTGTAATGGAAAACAAAGTTTATGTGTACCGTGGGCCTCAATTTACCATTCATCTGAATGCGATATGCCAAATGGTTAGAGCTTATAACATCAATGGCCAAACCATTCCCAACAGAGACATTAACAACATCAACAAGCAGAACTACATACAAAGTTATGTGAGAGAAGCATATGATAGATGGAATGAGTTGGAAGAAATTGATGAAGCTTTGAATGATAACGTTGCTTTGTTAACTCAAGGTGAAAGAATGGAACAATTTCAAAACAATAATAATCATCAAGTATCATATGATCAGAATGACTTTTTTGTTGATAAATCTGGGTGCATAGAATGGTCACCATTTGCCACGTCACCGTTGGTGAATGGAATAGCTTATAGCTTCTCAGGAGCAATCACTGATGATGGAGCCTTAAGGTGGCATTAG 1362 0.3796 MAAKRLLDDSDQDKHKRIRTTTTPFASAIGEIVMVKNMQNLFSGLEPLLRRVVNEEVERAMRQCYPPRSITRSPSLRLQAMEHPSSFQFIFKKKLSLSIFTGSRLLDMDGNSINVILVDKSNGQNVPTSLPHPIKIEIVVLDGDFPSSEKESSWTSEEFNSNIVKERTGKRPLLTGELNLTMRDGIAPIGDIEFTDNSSWTRSRKFRLGVRVVPGTNQNVQIREGMTEPFVVKDHRGELYKKHHPPSLNDEVWRLEKIGKDGAFHKKLTLAKITTVQEFLKLSVIDPQRLRKILGIAMSEKMWDATMKHAKSCVMENKVYVYRGPQFTIHLNAICQMVRAYNINGQTIPNRDINNINKQNYIQSYVREAYDRWNELEEIDEALNDNVALLTQGERMEQFQNNNNHQVSYDQNDFFVDKSGCIEWSPFATSPLVNGIAYSFSGAITDDGALRWH 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03984 453 PANTHER OS02G0177800 PROTEIN 1 405 IPR012416 GO:0005516
Vifa6g03984 453 Pfam Calmodulin binding protein-like N-terminal domain 88 235 IPR046831 -
Vifa6g03984 453 Pfam Calmodulin binding protein C-terminal domain 318 379 IPR046829 -
Vifa6g03984 453 Pfam Calmodulin binding protein central domain 247 313 IPR046830 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03984 Vifa-Chr6 1313980073 1313982074 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03984 3 380 Calmodulin-binding Proteins AT5G57580 48.042 4.96e-114 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03984 - - gmx:100802257 592.038