Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03980 ATGGCGACGCCGTTAGACGGCGGAGGTGTGGCGGTTCTAACGAACTCGGCGAACAAGGTCGATTCCTCTTCGGTTCTTAATGGCGGTTTGAAGTGCTCGAAACTCGATTCACCGATTTTGATTTTCTTGTTCTTTCATAAAGCGATTCGGAATGAGCTTGACATTTTGCACCGATTAGCCATGGCATTTGCCACCGGTAATCGCTCTGATATTCAGCCGCTGTTCGAGCGTTACCGTTTTCTCAGTTCCATTTATAGACACCACTCCAATGCTGAAGATGAGGTGATTTTTCCCGCTCTAGATAGACGTGTGAAGAATGTTGCAAAAACTTATTCTCTTGAGCACAAGGGTGAAAGCAATCTTTTTGATCATCTATTTGAGCTGTTAAATTCTTCCATCAAGAATGACGAAAGTTTTCCAAGAGAGTTAGCATCTTGCACAGGAGCCTTACAGACATCAGTTAGTCAACACTTGGCAAAGGAAGAGGAACAGGTTTTTCCTCTGCTTATTGAGAAGTTCTCTCTTGAGGAACAATCATCCCTAGTTTGGCAGTTTCTTTGCAGTATTCCTGTGAATATGATGGCAGAATTTCTTCCCTGGCTTTCAACATCTATATCAGCAGATGAATCTCAGGACTTACGAGATTTCTTAGTCAAGATTGTGCCAGAGGAAAGGCTTCTTCAAAAGGTTGTTTTCACTTGGATGGAAGGGAGAAGTAGTGTTAATACAATTCAAAGTAGTGCAGATTATTCTCAGGTTCAATGTTGTTCTAGCCCGTTAAGGCATCAGGCTGGAAGAGTCAATTGTGTATGTGAATCCACAACAACTGGAAAAAGGAAACATTCTGGATCTATACTAGATGTTTCTGATGTCACTGGAACACACCCTATAGATGAGATATTGCTCTGGCATAATGCAATAAAAAAAGAGCTAAGTGAGATAGCAGTGGAAACCAGAAGGATACAAAACTCCGGAGATTTTACTGACATATCAGCTTTTAATGACAGATTGCAATTCATTGCTGACGTTTGCATATTTCATAGTATTGCTGAGGACAAGGTTATTTTTCCGGCGGTAGATGGAGAGTTTTCTTTCTTTCAGGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTTCGGTGTTTGATTGAAAGTATTCTAAGTGAAGGAGCAACATCTAATTCAGAAGTTGAATTTTATTCCAAGTTATGCTCCCATGCTGATCATATAATGGAAACCACACAGAGGCATTTCCATAATGAAGAAGTTCAGGTTCTTCCACTTGCAAGAAAGCACTTCAGCTTTAGAAGACAATGTGAACTTCTGTACCAAAGCTTATGCATGATGCCTCTGAAATTGATTGAGAGAGTCCTACCATGGTTGGTAAAATCTTTAACAGAAGAAGAAGCAAATATATTTCTGAGAAACATGCAATTTGCAGCTCCAACAGCAGATTCTGCTCTGGTCACCCTCTTCAGTGGTTGGGCATGCAAGGCTCGTAATGAAGGCCTGTGTCTGTCTTCAGGCACTTCAGACTGCTGTCCTGCTCAAAGACTTTCTGATATTGAAGAAGATATTGATCAGCCATCCTGTGTTTGTTCCTCTGCATCATCCTGCAGACATTGCTCAGTATTACTTGAGTCAGATGGCAACAAAAGACCAGTCAAGCGAAACACATTGAAGTTGAGCAATGGAGATGTACCTGAAACTTTGGAGACTGAAAGTATCCAGAAACAGTGCTGTAGTCCGCGGTCTTGTTGTGTACCAGGTTTAGGTGTAAACAGTAACAATTTGGGGCTTAGTTCAGTTTCGACAACCAAGTCCTTACGCTCCTTGTCTTTCAGCTCTTCTGCTCCTTCTCTTAATTCTAGTCTTTTCATATGGGAAGCAGAGAGCAGCTCATGTGATGTTGGCTCTGCAGAAAGACCAATTGATACCATATTTAAATTCCATAAAGCTATACGCAAAGACTTGGAGTATCTAGATGTTGAATCTGGAAAGCTGAGTGATAGTGATGAGACAGTTATTAGGCAATTTAGTGGAAGATTTCGTCTTTTGTGGGGTTTATATAGAGCTCATAGTAATGCAGAAGATGATATAGTATTTCCAGCATTAGAATCCAAAGAGGCCCTTCACAATTTGACCCATATGGCAGGGGATTTGGGTGATAGTAATTTTGGAACTTCTGATGCAAATGATAGGGATGATGTCAAGAAGTATAACGAACTTGCAACAAAGCTTCAGGGGATGTGCAAATCCATAAGAGTGACCCTGGATCAGCATATTTTCAGGGAAGAGTGTGAACTGTGGCCGTTGTTTGGGAAACATTTCACTGTGGAAGAACAAGATAAGATAGTAGGCCGGATAATTGGAACTACAGGTGCTGAAGTTCTCCAGTCAATGTTACCATGGGTAACTTCTGCACTTACACAGGATGAGCAGAATAAAATGATGGATACGTGGAAGCAGGCAACTAAGAATACTATGTTCAATGAATGGCTTAATGAATGCTGGAAAGAGAGTCCGGAATCTATAACACAGACAGAAACATCACATTGTAGCACTTCTCACAGAGGTTCTGAGTATCAGGAATGCTTGGACCACAATGATCAAATGTTCAAGCCAGGTTGGAAAGACATATTCCGGATGAATCAGACTGAACTTGAGTCAGAGATTCGGAAGGTTTATCGCGACTCAACTCTTGATCCAAGGAGAAAGGCATATCTTGTGCAGAATCTTTTGACAAGTCGTTGGATAGCTGCCCAGCAGAAATCACCTAAAGCTCCATCTGAAGAAGGATCATCTAATGGTGTCGAAATAGAAGGACACTCACCATCATTTCGGGACCCTAGGAAACTTGTATTTGGGTGTGAGCACTATAAGAGAAATTGCAAGCTTCGAGCTGCATGTTGCGGCAAGTTATTTACTTGCAGATTTTGTCATGACAATGTGAGCGATCACTCAATGGATAGAAAAGCAACATCAGAAATGATGTGTATGCGCTGCATGAATATACAGCCAATTGGGCCTATTTGCATGACACCTTCATGTAATGCACTTTCAATGGCAAAGTACTATTGCAGTATATGCAAATTTTTTGATGACGAAAGGAATGTATACCATTGCCCATTTTGCAATTTATGCCGTGTTGGACGAGGGCTAGGGATTGATTATTTTCATTGCATGAAATGCAATTGCTGCCTGGGGATTAAAACATCATCTCATAAGTGCCTGGAGAAAGGTTTAGAAATGAACTGCCCAATATGCTGTGACGACTTATTCACGTCAAGTGCTACAGTCAGAGCTCAGCCCTGTGGCCACTACATGCATTCTGCTTGCTTTCAGGCCTACACTTGTAGTCACTACACGTGTCCAATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTATTTTGGTATGCTTGACGCCTTGTTGGCTGCAGAGGAGCTCCCTGAAGAGTATAGGGACCGATATCAGGACATACTTTGCAATGACTGTGATCGAAAGGGAACTTCACGCTTCCACTGGTTGTATCATAAATGTGGGTCTTGTGGCTCTTACAATACTCGGTTGATCAAGCGCGAGACACGCTGA 3594 0.4179 MATPLDGGGVAVLTNSANKVDSSSVLNGGLKCSKLDSPILIFLFFHKAIRNELDILHRLAMAFATGNRSDIQPLFERYRFLSSIYRHHSNAEDEVIFPALDRRVKNVAKTYSLEHKGESNLFDHLFELLNSSIKNDESFPRELASCTGALQTSVSQHLAKEEEQVFPLLIEKFSLEEQSSLVWQFLCSIPVNMMAEFLPWLSTSISADESQDLRDFLVKIVPEERLLQKVVFTWMEGRSSVNTIQSSADYSQVQCCSSPLRHQAGRVNCVCESTTTGKRKHSGSILDVSDVTGTHPIDEILLWHNAIKKELSEIAVETRRIQNSGDFTDISAFNDRLQFIADVCIFHSIAEDKVIFPAVDGEFSFFQEHAEEESQFNDFRCLIESILSEGATSNSEVEFYSKLCSHADHIMETTQRHFHNEEVQVLPLARKHFSFRRQCELLYQSLCMMPLKLIERVLPWLVKSLTEEEANIFLRNMQFAAPTADSALVTLFSGWACKARNEGLCLSSGTSDCCPAQRLSDIEEDIDQPSCVCSSASSCRHCSVLLESDGNKRPVKRNTLKLSNGDVPETLETESIQKQCCSPRSCCVPGLGVNSNNLGLSSVSTTKSLRSLSFSSSAPSLNSSLFIWEAESSSCDVGSAERPIDTIFKFHKAIRKDLEYLDVESGKLSDSDETVIRQFSGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNLTHMAGDLGDSNFGTSDANDRDDVKKYNELATKLQGMCKSIRVTLDQHIFREECELWPLFGKHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLNECWKESPESITQTETSHCSTSHRGSEYQECLDHNDQMFKPGWKDIFRMNQTELESEIRKVYRDSTLDPRRKAYLVQNLLTSRWIAAQQKSPKAPSEEGSSNGVEIEGHSPSFRDPRKLVFGCEHYKRNCKLRAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMRCMNIQPIGPICMTPSCNALSMAKYYCSICKFFDDERNVYHCPFCNLCRVGRGLGIDYFHCMKCNCCLGIKTSSHKCLEKGLEMNCPICCDDLFTSSATVRAQPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRYQDILCNDCDRKGTSRFHWLYHKCGSCGSYNTRLIKRETR 1197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03980 1197 FunFam Zinc finger protein BRUTUS 638 836 - -
Vifa6g03980 1197 SUPERFAMILY Zinc hairpin stack 1023 1079 IPR037275 -
Vifa6g03980 1197 Gene3D - 1157 1196 - -
Vifa6g03980 1197 ProSiteProfiles Zinc finger RING-type profile. 1086 1128 IPR001841 -
Vifa6g03980 1197 Pfam CHY zinc finger 957 1032 IPR008913 GO:0008270
Vifa6g03980 1197 Gene3D nmb1532 protein domain like 639 848 - -
Vifa6g03980 1197 Gene3D nmb1532 protein domain like 298 445 - -
Vifa6g03980 1197 Gene3D nmb1532 protein domain like 35 187 - -
Vifa6g03980 1197 MobiDBLite consensus disorder prediction 921 945 - -
Vifa6g03980 1197 MobiDBLite consensus disorder prediction 921 941 - -
Vifa6g03980 1197 SUPERFAMILY CHY zinc finger-like 952 1013 IPR037274 GO:0008270
Vifa6g03980 1197 Pfam Zinc-ribbon 1133 1190 IPR039512 -
Vifa6g03980 1197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1082 1130 IPR013083 -
Vifa6g03980 1197 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 686 1194 - -
Vifa6g03980 1197 FunFam RING finger and CHY zinc finger domain-containing protein 1 1156 1197 - -
Vifa6g03980 1197 ProSiteProfiles Zinc finger CHY-type profile. 950 1019 IPR008913 GO:0008270
Vifa6g03980 1197 Pfam Ring finger domain 1085 1127 IPR001841 -
Vifa6g03980 1197 CDD Hr-like 298 427 - -
Vifa6g03980 1197 CDD RING-H2_Pirh2-like 1085 1128 - -
Vifa6g03980 1197 CDD Hr-like 41 167 - -
Vifa6g03980 1197 SUPERFAMILY RING/U-box 1084 1131 - -
Vifa6g03980 1197 ProSiteProfiles Zinc finger CTCHY-type profile. 1022 1085 IPR017921 -
Vifa6g03980 1197 Pfam Hemerythrin HHE cation binding domain 643 772 IPR012312 -
Vifa6g03980 1197 Pfam Hemerythrin HHE cation binding domain 43 169 IPR012312 -
Vifa6g03980 1197 SMART ring_2 1086 1127 IPR001841 -
Vifa6g03980 1197 FunFam Zinc finger protein-related isoform 1 1081 1130 - -
Vifa6g03980 1197 CDD Hr-like 645 771 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03980 Vifa-Chr6 1313101690 1313114308 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03980 1 1196 C2H2 Transcription Factor Family AT3G18290 65.096 0.0 1622