Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03972 ATGTCCTTTGAGCTTGAGATTCTGACACTCGAGTCTCTGAATTTTGTATCATGGCCGCAGCCACTTCGTGACTGCGAAGCAGTTGTTGTTAACTTGCCTATATGCTCTTTCTCAAATTACCCTTCTTACCTTCCTTTGGTGCTTCGATTCATGAAGCAACTCATGCCTAAAATCGTGGTTACATTGGATAGGAGCTGCGATCGAACTGACACACCGTTTCCTCAGCATATGATTCTCGCTATCCAGTCTTATTCCGGTTTGCTCGAGTCACGTGACGCTGTTAGTGTTAATGTTCATCCATACGTACTTCAAATGATTGAAAAATACTATCTTCAACCAGCAATCGAGAAGCTTGTTTTGGGCCGTCTGCGTTCACAAGACAGAACACTTCCTTGGAAAAATCTTCTCTTGTCGTCAGGGTTCTCGCCATTGACGTTTAGCAACTTTACTGAGTCACAAGCTGAGTGTTTGGTACGGAGGATTCCCGGCAGGGGATTCCATGTCGAGAAGAAGCAGAATTCACTCGTGTTGTGCTGGCAAAGGAAGGATCTCATCTCGATTTCAACTTGGAGATGCTGA 579 0.4491 MSFELEILTLESLNFVSWPQPLRDCEAVVVNLPICSFSNYPSYLPLVLRFMKQLMPKIVVTLDRSCDRTDTPFPQHMILAIQSYSGLLESRDAVSVNVHPYVLQMIEKYYLQPAIEKLVLGRLRSQDRTLPWKNLLLSSGFSPLTFSNFTESQAECLVRRIPGRGFHVEKKQNSLVLCWQRKDLISISTWRC 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03972 192 ProSiteProfiles GRAS family profile. 1 191 IPR005202 -
Vifa6g03972 192 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 16 186 IPR005202 -
Vifa6g03972 192 Pfam GRAS domain family 4 191 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03972 Vifa-Chr6 1311431220 1311431798 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03972 1 192 GRAS Transcription Factor Family AT4G00150 51.813 6.38e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa6g03972 GRAS 5.9e-33 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03972 - - gmx:100792973 334.724