Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03969 ATGATAACCGATATGAAAAGTGGTGGTGCAGATGCAGGTGCCTTGGGAGCCAAGACAGCGAGAGCTTGTGATAGTTGCATGAGAAGAAGAGCTCGTTGGTTTTGTGCTGCAGATGATGCTTTTCTTTGTCATGGTTGTGACAATTTGGTTCATTCGGCTAATCAGTTAGCGAGTAGACACGAAAGGGTTCGCCTTCAAACCGCGTCTGCTAAGGTAACAACGACAACAGCAACAGCAAAAGCATGGCATAGTGGATTCACTAGAAAAGCAAGAACGCCGCGTCATAATAAGAATTCGTCGATTCAGCAGCAACAACAACGGCTTAAGGAGAAGGTTCTTTTTAATACTAGTTTTCTTCCGCTCGTTCCTGAGCTCGGAGGAGAAGAAGAAGAAGAAGAACGGGAACGGGAATTGCTAGTTGATATTAATGAGATTGCGGAGGAGGAGGAGCAGTTGCTATGTCGCGTCCCGGTTTATGATGTCGACCCTTTTGATTTAGAGAATTGTAATGTGAAAAATGATGCTGCTGATTTTGAGGACATGTGTGATTTGGATAGTTTCTGTGAGTTTGATGTTGATCTAGCTGAATTTGCAACTAATGTTGAAAGTTTACTTGGTGTTGGGAGTAGTGAGATTCATGAGAATTCATCGGAACAAGTGTTTGATTATAAACAAGAGAATGAAATGGATCCATCCAAAAATGAAATATTAAAGGTTAAAGATGAAGAACTTGATGATTTGGAATCAGTTTTTGATATGACAAGTGATGAAGTTTTTCATTGGAATATAGATCATGATGAATCAATGGCTCATCAAGAGAAAGACTTTATGCCTTTGAGTATTAATAGTAGTGTTGGTGTTAGTGAGAGTGTTATTACTAAAGAAACTAAAAGAGAGAGATTTTTGAGACTAAACTATGAAGATGTTATTAGTGCTTGGACTAGGCAAGGCTCTCCTTCTCCATGGACTACCGCAAACCCTCCTAAGTTCAACTCCGATGATGATTCGTGGCAAAACTTCTTGGGTTCAAGTGGTGTAGATGGAGAAATAAGAAGCATAAGAGGGAACTTAATAGGAAGTAATGGAGATGGAGGAAGAGAAGCAAGAGTATCAAGGTATAGAGAGAAAAGAAGAACGCGTTTGTTTGCAAAGAAGATAAGATATGAAGTAAGGAAATTGAATGCAGAAAAGAGACCAAGAATGAAAGGTCGTTTTGTTAAGAGAACAGCATGTTTTGCTGGAGGAGCAGCTTCATTTCCAACTAATTATCGCTGA 1275 0.3969 MITDMKSGGADAGALGAKTARACDSCMRRRARWFCAADDAFLCHGCDNLVHSANQLASRHERVRLQTASAKVTTTTATAKAWHSGFTRKARTPRHNKNSSIQQQQQRLKEKVLFNTSFLPLVPELGGEEEEEERERELLVDINEIAEEEEQLLCRVPVYDVDPFDLENCNVKNDAADFEDMCDLDSFCEFDVDLAEFATNVESLLGVGSSEIHENSSEQVFDYKQENEMDPSKNEILKVKDEELDDLESVFDMTSDEVFHWNIDHDESMAHQEKDFMPLSINSSVGVSESVITKETKRERFLRLNYEDVISAWTRQGSPSPWTTANPPKFNSDDDSWQNFLGSSGVDGEIRSIRGNLIGSNGDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTACFAGGAASFPTNYR 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03969 424 Pfam CCT motif 366 408 IPR010402 GO:0005515
Vifa6g03969 424 Pfam B-box zinc finger 20 63 IPR000315 GO:0008270
Vifa6g03969 424 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 12 411 - -
Vifa6g03969 424 SMART bboxneu5 18 65 IPR000315 GO:0008270
Vifa6g03969 424 Coils Coil 128 149 - -
Vifa6g03969 424 ProSiteProfiles CCT domain profile. 366 408 IPR010402 GO:0005515
Vifa6g03969 424 CDD Bbox1_BBX-like 22 65 - -
Vifa6g03969 424 ProSiteProfiles Zinc finger B-box type profile. 18 65 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03969 Vifa-Chr6 1310367799 1310369743 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03969 12 408 C2C2-CO-like Transcription Factor Family AT1G25440 42.032 7.76e-85 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vifa6g03969 zf-B_box 1.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03969 - - adu:107478728 404.445