Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03968 ATGAATTCCCCATCTGATAGAAAGATAAAAATACCCAAAGAATTGGATAGTCTAGATGACATATTCAATGGAATTGAAAGAAATGGTCATTTAGGATTATCGGATCAGGGTGAGGTTGAAGGTAAACATCGATTGGTTTTGGTTCAATGGTTAAATAGTCTTGTTCCTTCATTGGACTTCTCGACAACTGTCACGGATGGTGAGTTAAGAGCGAGTTTAAGCAATGGTACAGTTTTGTGCCAGATACTGAACAAACTACGACCCGGCTCCGTGACTATGGTCAGTGAATCTGATCATTCGCTGCCATCACAATCCGAAAACGTTAGAACCTTTCTGAAAGCTTTGGATGGATTGGGGTGTCCGCGGTTTGAGATATCAGACCTAGAGAAGGGATCTATGAAGCCTGTTGTGGATTGTCTTTTAATACTGAGAATCAAAAGCTTGATGAATACTTTGGGAGAGAATGTTTCTTCAACTAGTTCAACTGCATCGAGCCCTCGTGGATATGCGGCTTCAAGTTTTCATTATTCCCCGCCATTTAGTGTGGATAAGCGGAGGGCTTCATCTGAGTCGAGGTTTCATCACATTATGAGTAGCCCTGTTATGGCGGAACCGTCGGCTTCATTAATATACCAAGTTGGTAATAAGTTCCATGAGGTGTTTCAAATTAAACCTAGAAGCTACGCAGATCTTCCTGCTGCAAAAATATCCGAAATGATGAAATCAAATAGTTTAGATAATGCTCCCACTCAGTCGCTACTAAGTGTAGTCAATGGTATTCTTGAAGAAAGCGTCGAAAGAAGAAATGGAGAAATACCTCATCGGGTTGCATGCTTGTTGAGAAAGGTTTCACAGGAGATTGAGCGCCGCATATCAACTCAAGCAGAACATTTACGAACTCAAAGTAATCTTTTTAAGGCCCGGGAAGAAAAGTATCAGTCGAGAATAAGAGTACTCGAGGCAATTGCATCTGGAAATAAAGAAGAGAGTGAGAGAGAACTTTTGTCACAGATATTCTTCGCTAGCCAGCGTCAACAGTTGAAGGTTGAGAAGATCAAAGAGGAAGAAAAGAAGGAAAATGAAAAAAAAATGATTCGGTTGATGAAAATGCTAGAGGACAAAAATTTGGTAATTTTAGAATTGACACAAAAACTGGAAGCAACCAAAAGCCAATATGAAACGCAATGCTCGCAGTTGGAAGACGAAGCTGGAGATGCTAAAGCAGAATTGAGACAGAAATCTCAAGAATATGAGCATCAATCAGAAGAGTTGAGGAATGAGGTTAAAGAACTCGAGACTTCTTCGGATTCAAAATATCAGGAGTGGAACATGAAAAAGAACCAATTGCAGGCTGTTGTAAATTTTCAATTTAGTTCCCTACAGAAATTGAAATTATCTTGGGAATCGATTAGGCAAGATGTTATGAACGAGCAAACGGTTTATGCAGAAGAGTGTAATCGATTAGGGGTAAATCTCAAACCACTCATACATGCATCTCAGAACTATCAAGTCATCCTCGCTGAAAATAAAAAAATGTTTAACGAAATTCAAGAACTAAAAGGAAACATCAGAGTATTTTGTCGAATTAGACCATTCCTTACAGGCAAAAAGGAAACACATTCAATTATAGAAGACATAGGTGAAAATGATTTGGTTGTGGAAAATCCCTCCAAAGGGAAAGATGCGCTTCGATCATTTAAGTTCAACAAGATATTCAGTCCTTCCGTGACTCAAGGGGATGTATACTCTGATATTCAACCTTTTGTAAGATCGGTACTAGATGGATATAATGTCTGTATGTTCGCTTACGGCCAAACAGGTTCGGGGAAGACTTACACAATGACTGGTCCAAGTGGAGCAACAAACGAAAATCTTGGTGTTAATTATCGAGCTCTAAACGATCTCTTTAGAATTTCCACAAGTAGGGCAGGCTTCACAGGCTATGAGATTTGGGTTCAAATGGTAGAGATATATAACGAGCAAGTTCGTGACTTGTTATCAACCGACGATTCTCAAAAAAGTTGGGATATTGACTCAATCTCATTCCAACGAGCTATTGGCGCGACCGCTATGAATGAAAGAAGTAGCCGTTCTCATAGTGTGGTCTCGATTCATGTTCGTGGGAAGGATTTCAGGTCAGGTTCTACTCTGCATGGCAATCTTCATTTGGTAGATTTGGCGGGAAGTGAAAGAGTAGATCGTTCTGAAGTAACCGGAGATAGGCTTAGAGAAGCGCAACATATAAACAAATCACTTTCTGCCCTCGGAGATGTCATTTTCGCCCTTTCTCAAAAGAGCTCCCATGTACCATATAGAAACAGCAAGCTTACTCAACTTCTGCAAAATTCTCTCGGTGGTCAAGCAAAGACTCTGATGTTTGTCCAAATTAACTCGGACGCGAGTTCATATTCTGAAACTCTGAGTACTTTGAAGTTTGCTGAGAGAGTTTCTTCGATTGAACTAGGAGCTGCACGGAATAGCAAGGAGGCGAGAGAATTAATGGAACAGGTGACTTGTATGAAGAACGCGATTTCGAAAAAAGATGAGGAGATTGAGCGTCTTAAATCGCTAAACGCGCCTGTTGCTGGTATTTCTAAGCAAATTCAAAAACAATCAAGTGGAAGTTTTAAGCATCTTGTTGAAGATACAGGTCTTAACGATAGATCAAGTGAAATCTCTGACAATCATAGTCTTGCTTTGGGCAACGAAACTGATGGTTCTTCTGATAACTCCATTAGGAGTCGCGAAAACAGAAAAACTTCTGATAACATGAAGAAGTCTAAAGTATTAACCAAACCTGCTAAACCGGTAAGGAAATTAGGCCGAATTCCCTCTAATGTGGGTATAGATAAGGACTCCTTGAAGAAAGCACCAGGTCTCACAAAAAGCCCGAGTATTAGCCACATTAAAGCTTCGAAAAGGTGGCAGTAA 2931 0.4012 MNSPSDRKIKIPKELDSLDDIFNGIERNGHLGLSDQGEVEGKHRLVLVQWLNSLVPSLDFSTTVTDGELRASLSNGTVLCQILNKLRPGSVTMVSESDHSLPSQSENVRTFLKALDGLGCPRFEISDLEKGSMKPVVDCLLILRIKSLMNTLGENVSSTSSTASSPRGYAASSFHYSPPFSVDKRRASSESRFHHIMSSPVMAEPSASLIYQVGNKFHEVFQIKPRSYADLPAAKISEMMKSNSLDNAPTQSLLSVVNGILEESVERRNGEIPHRVACLLRKVSQEIERRISTQAEHLRTQSNLFKAREEKYQSRIRVLEAIASGNKEESERELLSQIFFASQRQQLKVEKIKEEEKKENEKKMIRLMKMLEDKNLVILELTQKLEATKSQYETQCSQLEDEAGDAKAELRQKSQEYEHQSEELRNEVKELETSSDSKYQEWNMKKNQLQAVVNFQFSSLQKLKLSWESIRQDVMNEQTVYAEECNRLGVNLKPLIHASQNYQVILAENKKMFNEIQELKGNIRVFCRIRPFLTGKKETHSIIEDIGENDLVVENPSKGKDALRSFKFNKIFSPSVTQGDVYSDIQPFVRSVLDGYNVCMFAYGQTGSGKTYTMTGPSGATNENLGVNYRALNDLFRISTSRAGFTGYEIWVQMVEIYNEQVRDLLSTDDSQKSWDIDSISFQRAIGATAMNERSSRSHSVVSIHVRGKDFRSGSTLHGNLHLVDLAGSERVDRSEVTGDRLREAQHINKSLSALGDVIFALSQKSSHVPYRNSKLTQLLQNSLGGQAKTLMFVQINSDASSYSETLSTLKFAERVSSIELGAARNSKEARELMEQVTCMKNAISKKDEEIERLKSLNAPVAGISKQIQKQSSGSFKHLVEDTGLNDRSSEISDNHSLALGNETDGSSDNSIRSRENRKTSDNMKKSKVLTKPAKPVRKLGRIPSNVGIDKDSLKKAPGLTKSPSISHIKASKRWQ 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03968 976 PRINTS Kinesin heavy chain signature 720 738 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g03968 976 PRINTS Kinesin heavy chain signature 769 790 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g03968 976 PRINTS Kinesin heavy chain signature 689 706 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g03968 976 PRINTS Kinesin heavy chain signature 595 616 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g03968 976 Coils Coil 342 364 - -
Vifa6g03968 976 SMART kinesin_4 520 827 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g03968 976 Gene3D - 352 400 - -
Vifa6g03968 976 MobiDBLite consensus disorder prediction 886 976 - -
Vifa6g03968 976 SMART ch_5 43 143 IPR001715 GO:0005515
Vifa6g03968 976 Pfam Calponin homology (CH) domain 46 143 IPR001715 GO:0005515
Vifa6g03968 976 Pfam Kinesin motor domain 683 819 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g03968 976 ProSiteProfiles Kinesin motor domain profile. 522 819 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g03968 976 ProSiteProfiles Calponin homology (CH) domain profile. 41 148 IPR001715 GO:0005515
Vifa6g03968 976 Coils Coil 371 441 - -
Vifa6g03968 976 Gene3D Kinesin motor domain 464 678 IPR036961 -
Vifa6g03968 976 PANTHER KINESIN-LIKE PROTEIN KLP-3 364 925 IPR027640 GO:0003777|GO:0007018
Vifa6g03968 976 SUPERFAMILY Calponin-homology domain, CH-domain 44 149 IPR036872 -
Vifa6g03968 976 Gene3D Kinesin motor domain 679 858 IPR036961 -
Vifa6g03968 976 Gene3D - 35 148 IPR036872 -
Vifa6g03968 976 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 522 855 IPR027417 -
Vifa6g03968 976 Coils Coil 830 850 - -
Vifa6g03968 976 MobiDBLite consensus disorder prediction 909 929 - -
Vifa6g03968 976 Pfam Microtubule binding 509 666 IPR031852 GO:0008017
Vifa6g03968 976 MobiDBLite consensus disorder prediction 890 908 - -
Vifa6g03968 976 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein with CH (Calponin Homology) domain 464 675 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03968 Vifa-Chr6 1309405866 1309411084 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03968 286 850 Calmodulin-binding Proteins AT5G65930 32.680 4.14e-66 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03968 K10406 - cave:132185285 966.837