Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03965 ATGAATTCCCCATCTGATAGAAAGATAAAAATACCCAAAGAATTGGATAGTCTAGATGACATATTCAATGGAATTGAAAGAAATGGTCATTTAGGATTATCGGATCAGGGTGAGGTTGAAGGTAAACATCGATTGGTTTTGGTTCAATGGTTAAATAGTCTTGTTCCTTCATTGGACTTCTCGACAACTGTCACGGATGGTGAGTTAAGAGCGAGTTTAAGCAATGGTACAGTTTTGTGCCAGATACTGAACAAACTACGACCCGGCTCCGTGACTATGGTCAGTGAATCTGATCATTCGCTGCCATCACAATCCGAAAACGTTAGAACCTTTCTGAAAGCTTTGGATGGATTGGGGTGTCCGCGGTTTGAGATATCAGACCTAGAGAAGGGATCTATGAAGCCTGTTGTGGATTGTCTTTTAATACTGAGAATCAAAAGCTTGATGAATACTTTGGGAGAGAATGTTTCTTCAACTAGTTCAACTGCATCGAGCCCTCGTGGATATGCGGCTTCAAGTTTTCATTATTCCCCGCCATTTAGTGTGGATAAGCGGAGGGCTTCATCTGAGTCGAGGTTTCATCACATTATGAGTAGCCCTGTTATGGCGGAACCGTCGGCTTCATTAATATACCAAGTTGGTAATAAGTTCCATGAGGTGTTTCAAATTAAACCTAGAAGCTACGCAGATCTTCCTGCTGCAAAAATATCCGAAATGATGAAATCAAATAGTTTAGATAATGCTCCCACTCAGTCGCTACTAAGTGTAGTCAATGGTATTCTTGAAGAAAGCGTCGAAAGAAGAAATGGAGAAATACCTCATCGGGTTGCATGCTTGTTGAGAAAGGTTTCACAGGAGATTGAGCGCCGCATATCAACTCAAGCAGAACATTTACGAACTCAAAGTAATCTTTTTAAGGCCCGGGAAGAAAAGTATCAGTCGAGAATAAGAGTACTCGAGGCAATTGCATCTGGAAATAAAGAAGAGAGTGAGATATTCTTCGCTAGCCAGCGTCAACAGTTGAAGGTTGAGAAGATCAAAGAGGAAGAAAAGAAGGAAAATGAAAAAAAAATGATTCGGTTGATGAAAATGCTAGAGGACAAAAATTTGGTAATTTTAGAATTGACACAAAAACTGGAAGCAACCAAAAGCCAATATGAAACGCAATGCTCGCAGTTGGAAGACGAAGCTGGAGATGCTAAAGCAGAATTGAGACAGAAATCTCAAGAATATGAGCATCAATCAGAAGAGTTGAGGAATGAGGTTAAAGAACTCGAGACTTCTTCGGATTCAAAATATCAGGAGTGGAACATGAAAAAGAACCAATTGCAGGCTGTTGTAAATTTTCAATTTAGTTCCCTACAGAAATTGAAATTATCTTGGGAATCGATTAGGCAAGATGTTATGAACGAGCAAACGGTTTATGCAGAAGAGTGTAATCGATTAGGGGTAAATCTCAAACCACTCATACATGCATCTCAGAACTATCAAGTCATCCTCGCTGAAAATAAAAAAATGTTTAACGAAATTCAAGAACTAAAAGGAAACATCAGAGTATTTTGTCGAATTAGACCATTCCTTACAGGCAAAAAGGAAACACATTCAATTATAGAAGACATAGGTGAAAATGATTTGGTTGTGGAAAATCCCTCCAAAGGGAAAGATGCGCTTCGATCATTTAAGTTCAACAAGATATTCAGTCCTTCCGTGACTCAAGGGGATGTATACTCTGATATTCAACCTTTTGTAAGATCGGTACTAGATGGATATAATGTCTGTATGTTCGCTTACGGCCAAACAGGTTCGGGGAAGACTTACACAATGACTGGTCCAAGTGGAGCAACAAACGAAAATCTTGGTGTTAATTATCGAGCTCTAAACGATCTCTTTAGAATTTCCACAAGTAGGGCAGGCTTCACAGGCTATGAGATTTGGGTTCAAATGGTAGAGATATATAACGAGCAAGTTCGTGACTTGTTATCAACCGACGATTCTCAAAAAAGTTGGGATATTGACTCAATCTCATTCCAACGAGCTATTGGCGCGACCGCTATGAATGAAAGAAGTAGCCGTTCTCATAGTGTGGTCTCGATTCATGTTCGTGGGAAGGATTTCAGGTCAGGTTCTACTCTGCATGGCAATCTTCATTTGGTAGATTTGGCGGGAAGTGAAAGAGTAGATCGTTCTGAAGTAACCGGAGATAGGCTTAGAGAAGCGCAACATATAAACAAATCACTTTCTGCCCTCGGAGATGTCATTTTCGCCCTTTCTCAAAAGAGCTCCCATGTACCATATAGAAACAGCAAGCTTACTCAACTTCTGCAAAATTCTCTCGGTGGTCAAGCAAAGACTCTGATGTTTGTCCAAATTAACTCGGACGCGAGTTCATATTCTGAAACTCTGAGTACTTTGAAGTTTGCTGAGAGAGTTTCTTCGATTGAACTAGGAGCTGCACGGAATAGCAAGGAGGCGAGAGAATTAATGGAACAGGTGACTTGTATGAAGAACGCGATTTCGAAAAAAGATGAGGAGATTGAGCGTCTTAAATCGCTAAACGCGCCTGTTGCTGGTATTTCTAAGCAAATTCAAAAACAATCAAGTGGAAGTTTTAAGCATCTTGTTGAAGATACAGGTCTTAACGATAGATCAAGTGAAATCTCTGACAATCATAGTCTTGCTTTGGGCAACGAAACTGATGGTTCTTCTGATAACTCCATTAGGAGTCGCGAAAACAGAAAAACTTCTGATAACATGAAGAAGTCTAAAGTATTAACCAAACCTGCTAAACCGGTAAGGAAATTAGGCCGAATTCCCTCTAATGTGGGTATAGATAAGGACTCCTTGAAGAAAGCACCAGGTCTCACAAAAAGCCCGAGTATTAGCCACATTAAAGCTTCGAAAAGGTGGCAGTAA 2913 0.4013 MNSPSDRKIKIPKELDSLDDIFNGIERNGHLGLSDQGEVEGKHRLVLVQWLNSLVPSLDFSTTVTDGELRASLSNGTVLCQILNKLRPGSVTMVSESDHSLPSQSENVRTFLKALDGLGCPRFEISDLEKGSMKPVVDCLLILRIKSLMNTLGENVSSTSSTASSPRGYAASSFHYSPPFSVDKRRASSESRFHHIMSSPVMAEPSASLIYQVGNKFHEVFQIKPRSYADLPAAKISEMMKSNSLDNAPTQSLLSVVNGILEESVERRNGEIPHRVACLLRKVSQEIERRISTQAEHLRTQSNLFKAREEKYQSRIRVLEAIASGNKEESEIFFASQRQQLKVEKIKEEEKKENEKKMIRLMKMLEDKNLVILELTQKLEATKSQYETQCSQLEDEAGDAKAELRQKSQEYEHQSEELRNEVKELETSSDSKYQEWNMKKNQLQAVVNFQFSSLQKLKLSWESIRQDVMNEQTVYAEECNRLGVNLKPLIHASQNYQVILAENKKMFNEIQELKGNIRVFCRIRPFLTGKKETHSIIEDIGENDLVVENPSKGKDALRSFKFNKIFSPSVTQGDVYSDIQPFVRSVLDGYNVCMFAYGQTGSGKTYTMTGPSGATNENLGVNYRALNDLFRISTSRAGFTGYEIWVQMVEIYNEQVRDLLSTDDSQKSWDIDSISFQRAIGATAMNERSSRSHSVVSIHVRGKDFRSGSTLHGNLHLVDLAGSERVDRSEVTGDRLREAQHINKSLSALGDVIFALSQKSSHVPYRNSKLTQLLQNSLGGQAKTLMFVQINSDASSYSETLSTLKFAERVSSIELGAARNSKEARELMEQVTCMKNAISKKDEEIERLKSLNAPVAGISKQIQKQSSGSFKHLVEDTGLNDRSSEISDNHSLALGNETDGSSDNSIRSRENRKTSDNMKKSKVLTKPAKPVRKLGRIPSNVGIDKDSLKKAPGLTKSPSISHIKASKRWQ 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03965 970 Pfam Kinesin motor domain 677 813 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g03965 970 Gene3D Kinesin motor domain 673 852 IPR036961 -
Vifa6g03965 970 Gene3D - 35 148 IPR036872 -
Vifa6g03965 970 ProSiteProfiles Kinesin motor domain profile. 516 813 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g03965 970 SMART ch_5 43 143 IPR001715 GO:0005515
Vifa6g03965 970 ProSiteProfiles Calponin homology (CH) domain profile. 41 148 IPR001715 GO:0005515
Vifa6g03965 970 Coils Coil 824 844 - -
Vifa6g03965 970 MobiDBLite consensus disorder prediction 903 923 - -
Vifa6g03965 970 Gene3D - 346 394 - -
Vifa6g03965 970 PANTHER KINESIN-LIKE PROTEIN KLP-3 358 919 IPR027640 GO:0003777|GO:0007018
Vifa6g03965 970 MobiDBLite consensus disorder prediction 884 902 - -
Vifa6g03965 970 Gene3D Kinesin motor domain 457 672 IPR036961 -
Vifa6g03965 970 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein with CH (Calponin Homology) domain 458 669 - -
Vifa6g03965 970 SMART kinesin_4 514 821 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g03965 970 MobiDBLite consensus disorder prediction 880 970 - -
Vifa6g03965 970 SUPERFAMILY Calponin-homology domain, CH-domain 44 149 IPR036872 -
Vifa6g03965 970 Pfam Microtubule binding 503 660 IPR031852 GO:0008017
Vifa6g03965 970 Pfam Calponin homology (CH) domain 46 143 IPR001715 GO:0005515
Vifa6g03965 970 Coils Coil 365 435 - -
Vifa6g03965 970 PRINTS Kinesin heavy chain signature 589 610 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g03965 970 PRINTS Kinesin heavy chain signature 763 784 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g03965 970 PRINTS Kinesin heavy chain signature 683 700 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g03965 970 PRINTS Kinesin heavy chain signature 714 732 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g03965 970 Coils Coil 336 358 - -
Vifa6g03965 970 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 516 849 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03965 Vifa-Chr6 1309405866 1309411084 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03965 401 844 Calmodulin-binding Proteins AT5G65930 35.908 9.21e-66 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03965 K10406 - cave:132185285 965.681