Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03954 ATGCACCAGCCGATCGGTCCCTCTGATGAGCAAAACAACGTCGTTGGTCGAACAAATATAAAGGCTATAGTCTTAGACATGATTGCTGCTGCATTCGAAACTTCTGCTACCGTCATGGAGTGGGCTTTATCCGAGCTCATGAGACATCCAAGAGTAATGAAAAATCTCCAACAAGAGTTAGATAATGTGGTTGGGGTCAACAAAGTGGAGGAAAATGATTTGTCAAAGTTAAGTTACTTAGATATTGTGATCATGGAGACGTTAAGATTATATCCCGCAGGGCCACTCGTGCCACGCGAGTCAACGGAGGATGCTACAGTTGATGGTTATTTCCTAAAAAAGAAATCAAGAATCATTGTGAATTTATGGACGATAGGAAGAGATTCTAAGATATGGTCCGACAATGCGGAAGAATTTTATCTAGAGAGATTCGTGGATAAAAATTTAGATTACCGCGGAAATGATTTCCAGTTTATACCATTTGGTTTTGGTCGAAGAGGATGTCCTGGAATAAACATGGGACTAATTACAGTGAAACTTGTTGTCACTCAACTGGTACATTGTTTTTCTTGGAAACTTCCCTCGAATATGACTCCAAATGATTTGGACATGACAGAAAAATTTGGTCTTTCAATCCCAAGAGCCAAACACTTGCTTGCGGTGCCAAAATATCGTCTTCACGGGGAAGCAACATGA 696 0.4066 MHQPIGPSDEQNNVVGRTNIKAIVLDMIAAAFETSATVMEWALSELMRHPRVMKNLQQELDNVVGVNKVEENDLSKLSYLDIVIMETLRLYPAGPLVPRESTEDATVDGYFLKKKSRIIVNLWTIGRDSKIWSDNAEEFYLERFVDKNLDYRGNDFQFIPFGFGRRGCPGINMGLITVKLVVTQLVHCFSWKLPSNMTPNDLDMTEKFGLSIPRAKHLLAVPKYRLHGEAT 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03954 231 SUPERFAMILY Cytochrome P450 12 225 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03954 231 Coils Coil 53 73 - -
Vifa6g03954 231 Gene3D Cytochrome P450 7 225 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03954 231 PRINTS E-class P450 group I signature 81 99 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03954 231 PRINTS E-class P450 group I signature 168 191 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03954 231 PRINTS E-class P450 group I signature 39 65 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03954 231 PRINTS E-class P450 group I signature 158 168 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03954 231 PRINTS E-class P450 group I signature 19 36 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03954 231 PANTHER CYTOCHROME P450 93A3-LIKE 12 227 - -
Vifa6g03954 231 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 161 170 IPR017972 GO:0005506|GO:0016705
Vifa6g03954 231 FunFam Predicted protein 28 220 - -
Vifa6g03954 231 PRINTS P450 superfamily signature 168 179 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03954 231 PRINTS P450 superfamily signature 82 93 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03954 231 PRINTS P450 superfamily signature 30 47 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03954 231 PRINTS P450 superfamily signature 159 168 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03954 231 Pfam Cytochrome P450 10 217 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03954 Vifa-Chr6 1306865410 1306866105 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03954 8 226 Monolignol Biosynthesis Gene Families AT4G36220 47.297 2.01e-72 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03954 - - gmx:100814172 379.407