Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03935 ATGGATTTAGAAGACAAGTTCCTTGTCAAAGTTTCTGGTGTTCAAAGCCTTTCTTCCAGTGTGCAAAGTACTCCAGAAAAAAATGGCCATTCAGATGATGCTTCGAGAAGTTCAGAACTCCTTCAGGAATTCATGAAACATGGTCCAAAAAAGGAACTTCTTCAAACGTGCTTTGATAAGGACAAAAAGAACACATCTTCAAAAAACAGGATGACTGAAGGAAAGTCATCTGGTAAGGATTCTGATTTTGGACATCCGAGCACTTGGATCTGTAAAAATGCTGCTTGTAGGGCAGTTCTATCAATGGATGACACATTTTGTAGGCGATGCTCTTGTTGTATCTGTCACCTTTTTGATGATAACAAGGATCCTAGTCTTTGGTTAGTATGCACATCTGAATCTACTCTAGGGGACTCCTGTGAATTGTCTTGCCATATCGAATGTGCCCTTCAACATGAAAAAGTGGGAGTTGTTGATCACGGGCAACTGATGCAACTGGATGGTGGTTATTGCTGTGCCTCCTGTGGTAAAGTTACTGGGATACTTGGATGCTGGAAGAAACAGCTAAATATTGCAAAAGATGCCCGTCGTGTAGATGTACTCTGTTATAGGATATATATGAGCTACAGACTTCTGAATGGAACTTCAAAATTCAAAGACCTGCATCAAATGGTTCAGGAGGCAAAGGCTAAACTGGAGACAGAAGTTGGTCCTCTTGACGGAGTTTCTGCCAAAATGGCACGAGGCATTGTCAGCAGACTCCCTATTGCCAGTGATGTACAGAGACTCTGCACTCTTGCTATTGAGAAAGCTGATAGCTGGCTGGCCACTGCTCCCAATTTAAATCCAGGTTCCAAAGAGGGTTCACTTCCTGCTCCTTGCAAGTTTGTTTTTGAAGAGAGTCGGGACGAGCCACACACAAAGGATCCTGTTTCTGTGTTTCCCAAATCTCAGAGGAGGATTTTGATATCCGACCTTCAACCGTGCACGGAATATACCTTTCGAATTGTATCTTACACTGACATGGGTGACCTGGGTCATTCCGAAGCTAAGTGTTTCACTAAGAGCATCGAGATAATTCAACATAAAATCTCTAAGTCTGTTGCTTCGAATCATAAAAAACTGAACTCTCAAGCCGGGGGTGATTTTTCCACAATCACAGGCCCCAGATTTAAGGTTCAAGACCTTGGGAAAATTTTGCGTCTTGCTTGGGCTCAAGAACGTGGTTACTTTGAGGAGTGTTGCTCCGCTGATGTGAAAAATTGCTGTGGACAAGGTGAAATGAACAAGCCTAAAATTTCAGAAACGTGGTTTCCTTCAGATTCGCGAGGCCTTGATTTAAATGTTGTTTCAGTTCCTGATTTGAATGAAGACCTAACACCTCCTTTTGAGTCTTCCAGAGATGAAGGCATTGGTTGCACTTTACTGCAGGCTGTAGAGGCAATTGATGATGCTGCTTCTCATGACCTACAGAAAAATGATTTAGCAAGATCACATAGGAGTGGCGACTCACAAACTTGGGCTCATGGCCCAAGAGAAGTCTCAGCTGTTGATTCTCGTGTATATGCGGCAGGCAGGAAAAGGTCTGCGAGCACAAATGAAGAAGGACATGACTGCGACAGCACTTTAATAAATGGTTCTCCTTTACGTATGCCTGACAGTTCACGTTCCTTGGATGAAAACTTTGAGTATTGTGTGAAAGTAATCCGTTGGCTAGAGTGTGAGGGTCACATCAAACAGGAGTTTAGGTTGAAATTGCTAACGTGGTTTAGTTTGAGATCAACCGAGCAGGAACGCAGGGTGGTAAATACCTTCATTCAAACTCTGATGGACGATCCAAGTAGTTTGGCAGGGCAACTGGTTGACTCTTTCTCTGATATTGTATCCAGCAAGAGGCCAAGAAATGGATTCAGTAGTAAGGCCGGGGCATCAAAATAA 1938 0.4319 MDLEDKFLVKVSGVQSLSSSVQSTPEKNGHSDDASRSSELLQEFMKHGPKKELLQTCFDKDKKNTSSKNRMTEGKSSGKDSDFGHPSTWICKNAACRAVLSMDDTFCRRCSCCICHLFDDNKDPSLWLVCTSESTLGDSCELSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRVDVLCYRIYMSYRLLNGTSKFKDLHQMVQEAKAKLETEVGPLDGVSAKMARGIVSRLPIASDVQRLCTLAIEKADSWLATAPNLNPGSKEGSLPAPCKFVFEESRDEPHTKDPVSVFPKSQRRILISDLQPCTEYTFRIVSYTDMGDLGHSEAKCFTKSIEIIQHKISKSVASNHKKLNSQAGGDFSTITGPRFKVQDLGKILRLAWAQERGYFEECCSADVKNCCGQGEMNKPKISETWFPSDSRGLDLNVVSVPDLNEDLTPPFESSRDEGIGCTLLQAVEAIDDAASHDLQKNDLARSHRSGDSQTWAHGPREVSAVDSRVYAAGRKRSASTNEEGHDCDSTLINGSPLRMPDSSRSLDENFEYCVKVIRWLECEGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLMDDPSSLAGQLVDSFSDIVSSKRPRNGFSSKAGASK 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03935 645 MobiDBLite consensus disorder prediction 62 80 - -
Vifa6g03935 645 MobiDBLite consensus disorder prediction 12 39 - -
Vifa6g03935 645 SUPERFAMILY Fibronectin type III 311 349 IPR036116 GO:0005515
Vifa6g03935 645 Pfam PHD - plant homeodomain finger protein 91 209 IPR032881 -
Vifa6g03935 645 Gene3D Immunoglobulins 279 357 IPR013783 -
Vifa6g03935 645 MobiDBLite consensus disorder prediction 526 552 - -
Vifa6g03935 645 MobiDBLite consensus disorder prediction 12 28 - -
Vifa6g03935 645 PANTHER VIN3-LIKE PROTEIN 2-RELATED 56 302 IPR044514 GO:0010048|GO:0040029
Vifa6g03935 645 MobiDBLite consensus disorder prediction 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03935 Vifa-Chr6 1301914997 1301921474 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03935 87 636 PHD Gene Family AT3G24440 46.870 2.80e-164 482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03935 - - tpra:123915437 1108.59