Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03934 ATGGATTTAGAAGACAAGTTCCTTGTCAAAGTTTCTGGTGTTCAAAGCCTTTCTTCCAGTGTGCAAAGTACTCCAGAAAAAAATGGCCATTCAGATGATGCTTCGAGAAGTTCAGAACTCCTTCAGGAATTCATGAAACATGGTCCAAAAAAGGAACTTCTTCAAACGTGCTTTGATAAGGACAAAAAGAACACATCTTCAAAAAACAGGATGACTGAAGGAAAGTCATCTGGTAAGGATTCTGATTTTGGACATCCGAGCACTTGGATCTGTAAAAATGCTGCTTGTAGGGCAGTTCTATCAATGGATGACACATTTTGTAGGCGATGCTCTTGTTGTATCTGTCACCTTTTTGATGATAACAAGGATCCTAGTCTTTGGTTAGTATGCACATCTGAATCTACTCTAGGGGACTCCTGTGAATTGTCTTGCCATATCGAATGTGCCCTTCAACATGAAAAAGTGGGAGTTGTTGATCACGGGCAACTGATGCAACTGGATGGTGGTTATTGCTGTGCCTCCTGTGGTAAAGTTACTGGGATACTTGGATGCTGGAAGAAACAGCTAAATATTGCAAAAGATGCCCGTCGTGTAGATGTACTCTGTTATAGGATATATATGAGCTACAGACTTCTGAATGGAACTTCAAAATTCAAAGACCTGCATCAAATGGTTCAGGAGGCAAAGGCTAAACTGGAGACAGAAGTTGGTCCTCTTGACGGAGTTTCTGCCAAAATGGCACGAGGCATTGTCAGCAGACTCCCTATTGCCAGTGATGTACAGAGACTCTGCACTCTTGCTATTGAGAAAGCTGATAGCTGGCTGGCCACTGCTCCCAATTTAAATCCAGAGGGTTCACTTCCTGCTCCTTGCAAGTTTGTTTTTGAAGAGAGTCGGGACGAGCCACACACAAAGGATCCTGTTTCTGTGTTTCCCAAATCTCAGAGGAGGATTTTGATATCCGACCTTCAACCGTGCACGGAATATACCTTTCGAATTGTATCTTACACTGACATGGGTGACCTGGGTCATTCCGAAGCTAAGTGTTTCACTAAGAGCATCGAGATAATTCAACATAAAATCTCTAAGTCTGTTGCTTCGAATCATAAAAAACTGAACTCTCAAGCCGGGGGTGATTTTTCCACAATCACAGGCCCCAGATTTAAGGTTCAAGACCTTGGGAAAATTTTGCGTCTTGCTTGGGCTCAAGAACGTGGTTACTTTGAGGAGTGTTGCTCCGCTGATGTGAAAAATTGCTGTGGACAAGGTGAAATGAACAAGCCTAAAATTTCAGAAACGTGGTTTCCTTCAGATTCGCGAGGCCTTGATTTAAATGTTGTTTCAGTTCCTGATTTGAATGAAGACCTAACACCTCCTTTTGAGTCTTCCAGAGATGAAGGCATTGGTTGCACTTTACTGCAGGCTGTAGAGGCAATTGATGATGCTGCTTCTCATGACCTACAGAAAAATGATTTAGCAAGATCACATAGGAGTGGCGACTCACAAACTTGGGCTCATGGCCCAAGAGAAGTCTCAGCTGTTGATTCTCGTGTATATGCGGCAGGCAGGAAAAGGTCTGCGAGCACAAATGAAGAAGGACATGACTGCGACAGCACTTTAATAAATGGTTCTCCTTTACGTATGCCTGACAGTTCACGTTCCTTGGATGAAAACTTTGAGTATTGTGTGAAAGTAATCCGTTGGCTAGAGTGTGAGGGTCACATCAAACAGGAGTTTAGGTTGAAATTGCTAACGTGGTTTAGTTTGAGATCAACCGAGCAGGAACGCAGGGTGGTAAATACCTTCATTCAAACTCTGATGGACGATCCAAGTAGTTTGGCAGGGCAACTGGTTGACTCTTTCTCTGATATTGTATCCAGCAAGAGGCCAAGAAATGGATTCAGTAGTAAGGCCGGGGCATCAAAATAA 1929 0.4318 MDLEDKFLVKVSGVQSLSSSVQSTPEKNGHSDDASRSSELLQEFMKHGPKKELLQTCFDKDKKNTSSKNRMTEGKSSGKDSDFGHPSTWICKNAACRAVLSMDDTFCRRCSCCICHLFDDNKDPSLWLVCTSESTLGDSCELSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRVDVLCYRIYMSYRLLNGTSKFKDLHQMVQEAKAKLETEVGPLDGVSAKMARGIVSRLPIASDVQRLCTLAIEKADSWLATAPNLNPEGSLPAPCKFVFEESRDEPHTKDPVSVFPKSQRRILISDLQPCTEYTFRIVSYTDMGDLGHSEAKCFTKSIEIIQHKISKSVASNHKKLNSQAGGDFSTITGPRFKVQDLGKILRLAWAQERGYFEECCSADVKNCCGQGEMNKPKISETWFPSDSRGLDLNVVSVPDLNEDLTPPFESSRDEGIGCTLLQAVEAIDDAASHDLQKNDLARSHRSGDSQTWAHGPREVSAVDSRVYAAGRKRSASTNEEGHDCDSTLINGSPLRMPDSSRSLDENFEYCVKVIRWLECEGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLMDDPSSLAGQLVDSFSDIVSSKRPRNGFSSKAGASK 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03934 642 MobiDBLite consensus disorder prediction 62 80 - -
Vifa6g03934 642 PANTHER VIN3-LIKE PROTEIN 2-RELATED 56 299 IPR044514 GO:0010048|GO:0040029
Vifa6g03934 642 MobiDBLite consensus disorder prediction 12 39 - -
Vifa6g03934 642 SUPERFAMILY Fibronectin type III 308 346 IPR036116 GO:0005515
Vifa6g03934 642 Pfam PHD - plant homeodomain finger protein 91 209 IPR032881 -
Vifa6g03934 642 Gene3D Immunoglobulins 275 354 IPR013783 -
Vifa6g03934 642 MobiDBLite consensus disorder prediction 523 549 - -
Vifa6g03934 642 MobiDBLite consensus disorder prediction 12 28 - -
Vifa6g03934 642 MobiDBLite consensus disorder prediction 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03934 Vifa-Chr6 1301914997 1301921474 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03934 87 633 PHD Gene Family AT3G24440 47.109 1.17e-164 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03934 - - tpra:123915437 1113.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03934 6 1301914997 1301921474 Vifa6g03934 6 1301914997 1301921474 ECH