Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03933 ATGGATTTAGAAGACAAGTTCCTTGTCAAAGTTTCTGGTGTTCAAAGCCTTTCTTCCAGTGTGCAAAGTACTCCAGAAAAAAATGGCCATTCAGATGATGCTTCGAGAAGTTCAGAACTCCTTCAGGAATTCATGAAACATGGTCCAAAAAAGGAACTTCTTCAAACGTGCTTTGATAAGGACAAAAAGAACACATCTTCAAAAAACAGGATGACTGAAGGAAAGTCATCTGGTAAGGATTCTGATTTTGGACATCCGAGCACTTGGATCTGTAAAAATGCTGCTTGTAGGGCAGTTCTATCAATGGATGACACATTTTGTAGGCGATGCTCTTGTTGTATCTGTCACCTTTTTGATGATAACAAGGATCCTAGTCTTTGGTTAGTATGCACATCTGAATCTACTCTAGGGGACTCCTGTGAATTGTCTTGCCATATCGAATGTGCCCTTCAACATGAAAAAGTGGGAGTTGTTGATCACGGGCAACTGATGCAACTGGATGGTGGTTATTGCTGTGCCTCCTGTGGTAAAGTTACTGGGATACTTGGATGCTGGAAGAAACAGCTAAATATTGCAAAAGATGCCCGTCGTGTAGATGTACTCTGTTATAGGATATATATGAGCTACAGACTTCTGAATGGAACTTCAAAATTCAAAGACCTGCATCAAATGGTTCAGGAGGCAAAGGCTAAACTGGAGACAGAAGTTGGTCCTCTTGACGGAGTTTCTGCCAAAATGGCACGAGGCATTGTCAGCAGACTCCCTATTGCCAGTGATGTACAGAGACTCTGCACTCTTGCTATTGAGAAAGCTGATAGCTGGCTGGCCACTGCTCCCAATTTAAATCCAGGTTCCAAAGAGGGTTCACTTCCTGCTCCTTGCAAGTTTGTTTTTGAAGAGGTAACAACTTCCTCCGTCAAAATCATTTTGATTGAAATGTCAAGTATATGTTCCAAGGATATTAAGGGGTACAAGCTCTGGTATTACAAGAGTCGGGACGAGCCACACACAAAGGATCCTGTTTCTGTGTTTCCCAAATCTCAGAGGAGGATTTTGATATCCGACCTTCAACCGTGCACGGAATATACCTTTCGAATTGTATCTTACACTGACATGGGTGACCTGGGTCATTCCGAAGCTAAGTGTTTCACTAAGAGCATCGAGATAATTCAACATAAAATCTCTAAGTCTGTTGCTTCGAATCATAAAAAACTGAACTCTCAAGCCGGGGGTGATTTTTCCACAATCACAGGCCCCAGATTTAAGGTTCAAGACCTTGGGAAAATTTTGCGTCTTGCTTGGGCTCAAGAACGTGGTTACTTTGAGGAGTGTTGCTCCGCTGATGTGAAAAATTGCTGTGGACAAGGTGAAATGAACAAGCCTAAAATTTCAGAAACGTGGTTTCCTTCAGATTCGCGAGGCCTTGATTTAAATGTTGTTTCAGTTCCTGATTTGAATGAAGACCTAACACCTCCTTTTGAGTCTTCCAGAGATGAAGGCATTGGTTGCACTTTACTGCAGGCTGTAGAGGCAATTGATGATGCTGCTTCTCATGACCTACAGAAAAATGATTTAGCAAGATCACATAGGAGTGGCGACTCACAAACTTGGGCTCATGGCCCAAGAGAAGTCTCAGCTGTTGATTCTCGTGTATATGCGGCAGGCAGGAAAAGGTCTGCGAGCACAAATGAAGAAGGACATGACTGCGACAGCACTTTAATAAATGGTTCTCCTTTACGTATGCCTGACAGTTCACGTTCCTTGGATGAAAACTTTGAGTATTGTGTGAAAGTAATCCGTTGGCTAGAGTGTGAGGGTCACATCAAACAGGAGTTTAGGTTGAAATTGCTAACGTGGTTTAGTTTGAGATCAACCGAGCAGGAACGCAGGGTGGTAAATACCTTCATTCAAACTCTGATGGACGATCCAAGTAGTTTGGCAGGGCAACTGGTTGACTCTTTCTCTGATATTGTATCCAGCAAGAGGCCAAGAAATGGATTCAGTAGTAAGGCCGGGGCATCAAAATAA 2028 0.4285 MDLEDKFLVKVSGVQSLSSSVQSTPEKNGHSDDASRSSELLQEFMKHGPKKELLQTCFDKDKKNTSSKNRMTEGKSSGKDSDFGHPSTWICKNAACRAVLSMDDTFCRRCSCCICHLFDDNKDPSLWLVCTSESTLGDSCELSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRVDVLCYRIYMSYRLLNGTSKFKDLHQMVQEAKAKLETEVGPLDGVSAKMARGIVSRLPIASDVQRLCTLAIEKADSWLATAPNLNPGSKEGSLPAPCKFVFEEVTTSSVKIILIEMSSICSKDIKGYKLWYYKSRDEPHTKDPVSVFPKSQRRILISDLQPCTEYTFRIVSYTDMGDLGHSEAKCFTKSIEIIQHKISKSVASNHKKLNSQAGGDFSTITGPRFKVQDLGKILRLAWAQERGYFEECCSADVKNCCGQGEMNKPKISETWFPSDSRGLDLNVVSVPDLNEDLTPPFESSRDEGIGCTLLQAVEAIDDAASHDLQKNDLARSHRSGDSQTWAHGPREVSAVDSRVYAAGRKRSASTNEEGHDCDSTLINGSPLRMPDSSRSLDENFEYCVKVIRWLECEGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLMDDPSSLAGQLVDSFSDIVSSKRPRNGFSSKAGASK 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03933 675 ProSiteProfiles Fibronectin type-III domain profile. 292 389 IPR003961 GO:0005515
Vifa6g03933 675 MobiDBLite consensus disorder prediction 62 80 - -
Vifa6g03933 675 CDD FN3 291 374 IPR003961 GO:0005515
Vifa6g03933 675 Pfam PHD - plant homeodomain finger protein 91 209 IPR032881 -
Vifa6g03933 675 PANTHER VIN3-LIKE PROTEIN 2-RELATED 55 670 IPR044514 GO:0010048|GO:0040029
Vifa6g03933 675 Pfam Fibronectin type III domain 291 376 IPR003961 GO:0005515
Vifa6g03933 675 MobiDBLite consensus disorder prediction 12 39 - -
Vifa6g03933 675 MobiDBLite consensus disorder prediction 556 582 - -
Vifa6g03933 675 MobiDBLite consensus disorder prediction 12 28 - -
Vifa6g03933 675 SUPERFAMILY Fibronectin type III 291 374 IPR036116 GO:0005515
Vifa6g03933 675 Gene3D Immunoglobulins 276 380 IPR013783 -
Vifa6g03933 675 MobiDBLite consensus disorder prediction 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03933 Vifa-Chr6 1301914997 1301921474 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03933 87 666 PHD Gene Family AT3G24440 49.155 0.0 527
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03933 - - tpra:123915437 1178.7