Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03931 ATGACAAGTCGATTCAAGGAAGATGAGAAAAATGAACGAATTATTCGAGGTCTCCTCAAACTTACACCGAATCGAAGATGCATTAATTGTAACAGCTTGGGACCGCAATATGTATGCACAAATTTCTGGACGTTTGTTTGCACAAGCTGTAGTGGAATACACCGAGAATTTACTCATCGAGTAAAATCAGTTTCCATGGCTAAGTTTACTGCACAAGAAGTTAGTGCACTTCAAGAAGGAGGAAATCAGCATGCAAAAGAAATATTTTTTAAAGAATGGGATCCGCAAACTCATTCTTTACCTGATAGCAATAATGTTGACAGGCTTCGGGACTTTATCAAGCATGTTTATGTAGATAAGAGATTCACTGGCGAGAGGTCCTATGACAAACCTCCAAAAGCACAGGGTGACAAAGATGATTCCTATGAAAACAGGAGAATGGAGACGTATCAGGGAGGACATAAAAGCCCTCCGTATGAAGACACATATGAACGTCGTTACAGTGACAGGTCTAGTCCGGGTGGAAGAAGTCCTGGCTATGATCAAGAAAGGCATTATGCCAATGATAAAAGAAGCCCTGGTCGCCCTCCAATAATCAACGACTGGCGTCGTGAAGATAGATTTGGGGATGGGAGGAAATTTGAAGATCGTAGAATATCCGATGGAGGTAATAAGATTGAAAGTCAATCTCCTGAGCGAGCCAAAGACCTGGGTTCTTCAAGCCCACTACCTGTTGTCCGACCCGTTAGAGAAATTTTGGGAGAAAATGTAGTACCTCTACGAATTAGTGAACCTCCCAAAGCAAACAGTGGACAGGCTGCTAATGGCTCAGGACTCACACAGAGAACGGCGTCTTCCAGTAGCTTGGCATCCAGTAATGGAACCCAAACAGAAGTTAAGCTTGAGACTATCAGGAGCCTTATTGATTTTGATGATATTCCTGAACCACCTATTGCTCCAGCAATTCCTCAAGCCACACCAACTACCGTGGCTCAACACGCGAATCCAACAAATTCTGGTGATAGCAATTGGGCCTCCTTTGATGTTGAACCTGTGGTAAAAGCATCTCAGGGTCTTTCAAATGTAAATCCGCTTGAATCTATGCTGTCCCAGTTGTCTGTTCCATCATCCTTACCTGCTCACGTTTCCGGAGCCCAAGGGCCTTTGGCAGGATCAGCTCCAGCTGCGAGCAGCTTCACAACTTTCCCAGCCAGTGTTGGTTCATTAACATCTTCTGGATTGACAACGGCATCACCTTTCAGTAATGCAGGCCCTTGGCATAGTTTGCAGTATCAGCAACCACAACCGCAACCACTGTTCACATCTACTGTTGGCCAGCCTACTATTCAACAATCTATCCCACCAGTAAATGGAGCTTTGAATTATCAGCCCTGGAATACATCTTCTGTACCCATGATACAGGGGCATCCAAGCACCCTAGTGCCAAATGTGTCAAAGGTTGTCAATGAGGAAAAGTATAGTGTTGCTTCACAAACTTCTACTGTAGACATAAAACCGAGTGGAAGAAATGAACTTCCCGAGGATCTATTCACTGTAAAATATTCAGCCTTCCCTGCTCCAATCCCAGGCTGGCAAATGGGTGCACCACCTGGCATGGGTGTCCCAGTTCAATATAATAATGTGATGTCCATACCAAGTTTCCCACAACCATCAAAATCTACAAATCCATTTGATGTGATCAATCAACCAACTCCGGTTCCGGTTCAAGCCCCAACATTTCCTTCTATGTCATCCTTGCAAGGTGCTTTGCCTAGTGTAACACCTTCAGCTACAGCGCACCCTTCAAACATGGTTAATCAATCTCTTGCCTGGAACCCTCCATCCTCATTATCATATGCACCAATGCCGCCTCCACAAGCACATACTTTTGCCTCAGCAATGAGACCTAGGGCATACATGGAACAACAAATGGCCACTAACGTGACAATGCCGAGCCATCAAGGACTTGGGACTTTTGGTACTGAGGGAGGTGCTTTTGGATTCTCTACTATAGATCAGCAGCCGAATGGTAGGTTGCCAGCCCCTGCTACGTTAAACCCCTTCCCTTCAGGGGGTAATCCTTTTGGATGA 2091 0.4505 MTSRFKEDEKNERIIRGLLKLTPNRRCINCNSLGPQYVCTNFWTFVCTSCSGIHREFTHRVKSVSMAKFTAQEVSALQEGGNQHAKEIFFKEWDPQTHSLPDSNNVDRLRDFIKHVYVDKRFTGERSYDKPPKAQGDKDDSYENRRMETYQGGHKSPPYEDTYERRYSDRSSPGGRSPGYDQERHYANDKRSPGRPPIINDWRREDRFGDGRKFEDRRISDGGNKIESQSPERAKDLGSSSPLPVVRPVREILGENVVPLRISEPPKANSGQAANGSGLTQRTASSSSLASSNGTQTEVKLETIRSLIDFDDIPEPPIAPAIPQATPTTVAQHANPTNSGDSNWASFDVEPVVKASQGLSNVNPLESMLSQLSVPSSLPAHVSGAQGPLAGSAPAASSFTTFPASVGSLTSSGLTTASPFSNAGPWHSLQYQQPQPQPLFTSTVGQPTIQQSIPPVNGALNYQPWNTSSVPMIQGHPSTLVPNVSKVVNEEKYSVASQTSTVDIKPSGRNELPEDLFTVKYSAFPAPIPGWQMGAPPGMGVPVQYNNVMSIPSFPQPSKSTNPFDVINQPTPVPVQAPTFPSMSSLQGALPSVTPSATAHPSNMVNQSLAWNPPSSLSYAPMPPPQAHTFASAMRPRAYMEQQMATNVTMPSHQGLGTFGTEGGAFGFSTIDQQPNGRLPAPATLNPFPSGGNPFG 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03931 696 PANTHER ARFGAP/RECO-RELATED 1 696 IPR044820 GO:0005096
Vifa6g03931 696 MobiDBLite consensus disorder prediction 325 345 - -
Vifa6g03931 696 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Vifa6g03931 696 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Vifa6g03931 696 Pfam Putative GTPase activating protein for Arf 13 124 IPR001164 GO:0005096
Vifa6g03931 696 MobiDBLite consensus disorder prediction 262 298 - -
Vifa6g03931 696 MobiDBLite consensus disorder prediction 268 298 - -
Vifa6g03931 696 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Vifa6g03931 696 MobiDBLite consensus disorder prediction 124 243 - -
Vifa6g03931 696 MobiDBLite consensus disorder prediction 124 150 - -
Vifa6g03931 696 Gene3D Arf GTPase activating protein 2 131 IPR038508 -
Vifa6g03931 696 CDD ArfGap_AGFG 12 122 - -
Vifa6g03931 696 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 135 - -
Vifa6g03931 696 MobiDBLite consensus disorder prediction 314 345 - -
Vifa6g03931 696 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Vifa6g03931 696 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Vifa6g03931 696 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Vifa6g03931 696 MobiDBLite consensus disorder prediction 182 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03931 Vifa-Chr6 1300605191 1300613570 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03931 12 122 C2H2 Transcription Factor Family AT4G05330 35.897 4.98e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03931 - - gmx:100815114 955.666