Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03930 ATGACAAGTCGATTCAAGGAAGATGAGAAAAATGAACGAATTATTCGAGGTCTCCTCAAACTTACACCGAATCGAAGATGCATTAATTGTAACAGCTTGGGACCGCAATATGTATGCACAAATTTCTGGACGTTTGTTTGCACAAGCTGTAGTGGAATACACCGAGAATTTACTCATCGAGTAAAATCAGTTTCCATGGCTAAGTTTACTGCACAAGAAGTTAGTGCACTTCAAGAAGGAGGAAATCAGCATGCAAAAGAAATATTTTTTAAAGAATGGGATCCGCAAACTCATTCTTTACCTGATAGCAAGCTTCGGGACTTTATCAAGCATGTTTATGTAGATAAGAGATTCACTGGCGAGAGGTCCTATGACAAACCTCCAAAAGCACAGGGTGACAAAGATGATTCCTATGAAAACAGGAGAATGGAGACGTATCAGGGAGGACATAAAAGCCCTCCGTATGAAGACACATATGAACGTCGTTACAGTGACAGGTCTAGTCCGGGTGGAAGAAGTCCTGGCTATGATCAAGAAAGGCATTATGCCAATGATAAAAGAAGCCCTGGTCGCCCTCCAATAATCAACGACTGGCGTCGTGAAGATAGATTTGGGGATGGGAGGAAATTTGAAGATCGTAGAATATCCGATGGAGGTAATAAGATTGAAAGTCAATCTCCTGAGCGAGCCAAAGACCTGGGTTCTTCAAGCCCACTACCTGTTGTCCGACCCGTTAGAGAAATTTTGGGAGAAAATGTAGTACCTCTACGAATTAGTGAACCTCCCAAAGCAAACAGTGGACAGGCTGCTAATGGCTCAGGACTCACACAGAGAACGGCGTCTTCCAGTAGCTTGGCATCCAGTAATGGAACCCAAACAGAAGTTAAGCTTGAGACTATCAGGAGCCTTATTGATTTTGATGATATTCCTGAACCACCTATTGCTCCAGCAATTCCTCAAGCCACACCAACTACCGTGGCTCAACACGCGAATCCAACAAATTCTGGTGATAGCAATTGGGCCTCCTTTGATGTTGAACCTGTGGTAAAAGCATCTCAGGGTCTTTCAAATGTAAATCCGCTTGAATCTATGCTGTCCCAGTTGTCTGTTCCATCATCCTTACCTGCTCACGTTTCCGGAGCCCAAGGGCCTTTGGCAGGATCAGCTCCAGCTGCGAGCAGCTTCACAACTTTCCCAGCCAGTGTTGGTTCATTAACATCTTCTGGATTGACAACGGCATCACCTTTCAGTAATGCAGGCCCTTGGCATAGTTTGCAGTATCAGCAACCACAACCGCAACCACTGTTCACATCTACTGTTGGCCAGCCTACTATTCAACAATCTATCCCACCAGTAAATGGAGCTTTGAATTATCAGGGGCATCCAAGCACCCTAGTGCCAAATGTGTCAAAGGTTGTCAATGAGGAAAAGTATAGTGTTGCTTCACAAACTTCTACTGTAGACATAAAACCGAGTGGAAGAAATGAACTTCCCGAGGATCTATTCACTGTAAAATATTCAGCCTTCCCTGCTCCAATCCCAGGCTGGCAAATGGGTGCACCACCTGGCATGGGTGTCCCAGTTCAATATAATAATGTGATGTCCATACCAAGTTTCCCACAACCATCAAAATCTACAAATCCATTTGATGTGATCAATCAACCAACTCCGGTTCCGGTTCAAGCCCCAACATTTCCTTCTATGTCATCCTTGCAAGGTGCTTTGCCTAGTGTAACACCTTCAGCTACAGCGCACCCTTCAAACATGGTTAATCAATCTCTTGCCTGGAACCCTCCATCCTCATTATCATATGCACCAATGCCGCCTCCACAAGCACATACTTTTGCCTCAGCAATGAGACCTAGGGCATACATGGAACAACAAATGGCCACTAACGTGACAATGCCGAGCCATCAAGGACTTGGGACTTTTGGTACTGAGGGAGGTGCTTTTGGATTCTCTACTATAGATCAGCAGCCGAATGGTAGGTTGCCAGCCCCTGCTACGTTAAACCCCTTCCCTTCAGGGGGTAATCCTTTTGGATGA 2046 0.4511 MTSRFKEDEKNERIIRGLLKLTPNRRCINCNSLGPQYVCTNFWTFVCTSCSGIHREFTHRVKSVSMAKFTAQEVSALQEGGNQHAKEIFFKEWDPQTHSLPDSKLRDFIKHVYVDKRFTGERSYDKPPKAQGDKDDSYENRRMETYQGGHKSPPYEDTYERRYSDRSSPGGRSPGYDQERHYANDKRSPGRPPIINDWRREDRFGDGRKFEDRRISDGGNKIESQSPERAKDLGSSSPLPVVRPVREILGENVVPLRISEPPKANSGQAANGSGLTQRTASSSSLASSNGTQTEVKLETIRSLIDFDDIPEPPIAPAIPQATPTTVAQHANPTNSGDSNWASFDVEPVVKASQGLSNVNPLESMLSQLSVPSSLPAHVSGAQGPLAGSAPAASSFTTFPASVGSLTSSGLTTASPFSNAGPWHSLQYQQPQPQPLFTSTVGQPTIQQSIPPVNGALNYQGHPSTLVPNVSKVVNEEKYSVASQTSTVDIKPSGRNELPEDLFTVKYSAFPAPIPGWQMGAPPGMGVPVQYNNVMSIPSFPQPSKSTNPFDVINQPTPVPVQAPTFPSMSSLQGALPSVTPSATAHPSNMVNQSLAWNPPSSLSYAPMPPPQAHTFASAMRPRAYMEQQMATNVTMPSHQGLGTFGTEGGAFGFSTIDQQPNGRLPAPATLNPFPSGGNPFG 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03930 681 MobiDBLite consensus disorder prediction 321 341 - -
Vifa6g03930 681 MobiDBLite consensus disorder prediction 258 294 - -
Vifa6g03930 681 MobiDBLite consensus disorder prediction 264 294 - -
Vifa6g03930 681 SUPERFAMILY ArfGap/RecO-like zinc finger 11 119 IPR037278 -
Vifa6g03930 681 MobiDBLite consensus disorder prediction 121 239 - -
Vifa6g03930 681 MobiDBLite consensus disorder prediction 311 341 - -
Vifa6g03930 681 CDD ArfGap_AGFG 12 118 - -
Vifa6g03930 681 Gene3D Arf GTPase activating protein 2 127 IPR038508 -
Vifa6g03930 681 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 131 - -
Vifa6g03930 681 PANTHER ARFGAP/RECO-RELATED 1 681 IPR044820 GO:0005096
Vifa6g03930 681 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Vifa6g03930 681 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Vifa6g03930 681 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Vifa6g03930 681 SMART arf_gap_3 12 126 IPR001164 GO:0005096
Vifa6g03930 681 Pfam Putative GTPase activating protein for Arf 13 120 IPR001164 GO:0005096
Vifa6g03930 681 MobiDBLite consensus disorder prediction 121 146 - -
Vifa6g03930 681 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 126 IPR001164 GO:0005096
Vifa6g03930 681 MobiDBLite consensus disorder prediction 178 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03930 Vifa-Chr6 1300605191 1300613570 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03930 12 118 C2H2 Transcription Factor Family AT4G05330 34.188 5.85e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03930 - - gmx:100815114 927.546