Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03929 ATGACAAGTCGATTCAAGGAAGATGAGAAAAATGAACGAATTATTCGAGGTCTCCTCAAACTTACACCGAATCGAAGATGCATTAATTGTAACAGCTTGGGACCGCAATATGTATGCACAAATTTCTGGACGTTTGTTTGCACAAGCTGTAGTGGAATACACCGAGAATTTACTCATCGAGTAAAATCAGTTTCCATGGCTAAGTTTACTGCACAAGAAGTTAGTGCACTTCAAGAAGGAGGAAATCAGCATGCAAAAGAAATATTTTTTAAAGAATGGGATCCGCAAACTCATTCTTTACCTGATAGCAATAATGTTGACAGGCTTCGGGACTTTATCAAGCATGTTTATGTAGATAAGAGATTCACTGGCGAGAGGTCCTATGACAAACCTCCAAAAGCACAGGTTGGTGACAAAGATGATTCCTATGAAAACAGGAGAATGGAGACGTATCAGGGAGGACATAAAAGCCCTCCGTATGAAGACACATATGAACGTCGTTACAGTGACAGGTCTAGTCCGGGTGGAAGAAGTCCTGGCTATGATCAAGAAAGGCATTATGCCAATGATAAAAGAAGCCCTGGTCGCCCTCCAATAATCAACGACTGGCGTCGTGAAGATAGATTTGGGGATGGGAGGAAATTTGAAGATCGTAGAATATCCGATGGAGGTAATAAGATTGAAAGTCAATCTCCTGAGCGAGCCAAAGACCTGGGTTCTTCAAGCCCACTACCTGTTGTCCGACCCGTTAGAGAAATTTTGGGAGAAAATGTAGTACCTCTACGAATTAGTGAACCTCCCAAAGCAAACAGTGGACAGGCTGCTAATGGCTCAGGACTCACACAGAGAACGGCGTCTTCCAGTAGCTTGGCATCCAGTAATGGAACCCAAACAGAAGTTAAGCTTGAGACTATCAGGAGCCTTATTGATTTTGATGATATTCCTGAACCACCTATTGCTCCAGCAATTCCTCAAGCCACACCAACTACCGTGGCTCAACACGCGAATCCAACAAATTCTGGTGATAGCAATTGGGCCTCCTTTGATGTTGAACCTGTGGTAAAAGCATCTCAGGGTCTTTCAAATGTAAATCCGCTTGAATCTATGCTGTCCCAGTTGTCTGTTCCATCATCCTTACCTGCTCACGTTTCCGGAGCCCAAGGGCCTTTGGCAGGATCAGCTCCAGCTGCGAGCAGCTTCACAACTTTCCCAGCCAGTGTTGGTTCATTAACATCTTCTGGATTGACAACGGCATCACCTTTCAGTAATGCAGGCCCTTGGCATAGTTTGCAGTATCAGCAACCACAACCGCAACCACTGTTCACATCTACTGTTGGCCAGCCTACTATTCAACAATCTATCCCACCAGTAAATGGAGCTTTGAATTATCAGGGGCATCCAAGCACCCTAGTGCCAAATGTGTCAAAGGTTGTCAATGAGGAAAAGTATAGTGTTGCTTCACAAACTTCTACTGTAGACATAAAACCGAGTGGAAGAAATGAACTTCCCGAGGATCTATTCACTGTAAAATATTCAGCCTTCCCTGCTCCAATCCCAGGCTGGCAAATGGGTGCACCACCTGGCATGGGTGTCCCAGTTCAATATAATAATGTGATGTCCATACCAAGTTTCCCACAACCATCAAAATCTACAAATCCATTTGATGTGATCAATCAACCAACTCCGGTTCCGGTTCAAGCCCCAACATTTCCTTCTATGTCATCCTTGCAAGGTGCTTTGCCTAGTGTAACACCTTCAGCTACAGCGCACCCTTCAAACATGGTTAATCAATCTCTTGCCTGGAACCCTCCATCCTCATTATCATATGCACCAATGCCGCCTCCACAAGCACATACTTTTGCCTCAGCAATGAGACCTAGGGCATACATGGAACAACAAATGGCCACTAACGTGACAATGCCGAGCCATCAAGGACTTGGGACTTTTGGTACTGAGGGAGGTGCTTTTGGATTCTCTACTATAGATCAGCAGCCGAATGGTAGGTTGCCAGCCCCTGCTACGTTAAACCCCTTCCCTTCAGGGGGTAATCCTTTTGGATGA 2061 0.4503 MTSRFKEDEKNERIIRGLLKLTPNRRCINCNSLGPQYVCTNFWTFVCTSCSGIHREFTHRVKSVSMAKFTAQEVSALQEGGNQHAKEIFFKEWDPQTHSLPDSNNVDRLRDFIKHVYVDKRFTGERSYDKPPKAQVGDKDDSYENRRMETYQGGHKSPPYEDTYERRYSDRSSPGGRSPGYDQERHYANDKRSPGRPPIINDWRREDRFGDGRKFEDRRISDGGNKIESQSPERAKDLGSSSPLPVVRPVREILGENVVPLRISEPPKANSGQAANGSGLTQRTASSSSLASSNGTQTEVKLETIRSLIDFDDIPEPPIAPAIPQATPTTVAQHANPTNSGDSNWASFDVEPVVKASQGLSNVNPLESMLSQLSVPSSLPAHVSGAQGPLAGSAPAASSFTTFPASVGSLTSSGLTTASPFSNAGPWHSLQYQQPQPQPLFTSTVGQPTIQQSIPPVNGALNYQGHPSTLVPNVSKVVNEEKYSVASQTSTVDIKPSGRNELPEDLFTVKYSAFPAPIPGWQMGAPPGMGVPVQYNNVMSIPSFPQPSKSTNPFDVINQPTPVPVQAPTFPSMSSLQGALPSVTPSATAHPSNMVNQSLAWNPPSSLSYAPMPPPQAHTFASAMRPRAYMEQQMATNVTMPSHQGLGTFGTEGGAFGFSTIDQQPNGRLPAPATLNPFPSGGNPFG 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03929 686 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Vifa6g03929 686 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Vifa6g03929 686 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Vifa6g03929 686 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Vifa6g03929 686 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Vifa6g03929 686 MobiDBLite consensus disorder prediction 326 346 - -
Vifa6g03929 686 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 135 - -
Vifa6g03929 686 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Vifa6g03929 686 MobiDBLite consensus disorder prediction 317 346 - -
Vifa6g03929 686 MobiDBLite consensus disorder prediction 183 233 - -
Vifa6g03929 686 CDD ArfGap_AGFG 12 122 - -
Vifa6g03929 686 MobiDBLite consensus disorder prediction 124 151 - -
Vifa6g03929 686 Gene3D Arf GTPase activating protein 2 132 IPR038508 -
Vifa6g03929 686 Pfam Putative GTPase activating protein for Arf 13 124 IPR001164 GO:0005096
Vifa6g03929 686 PANTHER ARFGAP/RECO-RELATED 1 686 IPR044820 GO:0005096
Vifa6g03929 686 MobiDBLite consensus disorder prediction 263 299 - -
Vifa6g03929 686 MobiDBLite consensus disorder prediction 124 244 - -
Vifa6g03929 686 MobiDBLite consensus disorder prediction 269 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03929 Vifa-Chr6 1300605191 1300613570 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03929 12 122 C2H2 Transcription Factor Family AT4G05330 35.897 4.92e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03929 - - gmx:100781002 934.095