Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03928 ATGACAAGTCGATTCAAGGAAGATGAGAAAAATGAACGAATTATTCGAGGTCTCCTCAAACTTACACCGAATCGAAGATGCATTAATTGTAACAGCTTGGGACCGCAATATGTATGCACAAATTTCTGGACGTTTGTTTGCACAAGCTGTAGTGGAATACACCGAGAATTTACTCATCGAGTAAAATCAGTTTCCATGGCTAAGTTTACTGCACAAGAAGTTAGTGCACTTCAAGAAGGAGGAAATCAGCATGCAAAAGAAATATTTTTTAAAGAATGGGATCCGCAAACTCATTCTTTACCTGATAGCAATAATGTTGACAGGCTTCGGGACTTTATCAAGCATGTTTATGTAGATAAGAGATTCACTGGCGAGAGGTCCTATGACAAACCTCCAAAAGCACAGGGTGACAAAGATGATTCCTATGAAAACAGGAGAATGGAGACGTATCAGGGAGGACATAAAAGCCCTCCGTATGAAGACACATATGAACGTCGTTACAGTGACAGGTCTAGTCCGGGTGGAAGAAGTCCTGGCTATGATCAAGAAAGGCATTATGCCAATGATAAAAGAAGCCCTGGTCGCCCTCCAATAATCAACGACTGGCGTCGTGAAGATAGATTTGGGGATGGGAGGAAATTTGAAGATCGTAGAATATCCGATGGAGGTAATAAGATTGAAAGTCAATCTCCTGAGCGAGCCAAAGACCTGGGTTCTTCAAGCCCACTACCTGTTGTCCGACCCGTTAGAGAAATTTTGGGAGAAAATGTAGTACCTCTACGAATTAGTGAACCTCCCAAAGCAAACAGTGGACAGGCTGCTAATGGCTCAGGACTCACACAGAGAACGGCGTCTTCCAGTAGCTTGGCATCCAGTAATGGAACCCAAACAGAAGTTAAGCTTGAGACTATCAGGAGCCTTATTGATTTTGATGATATTCCTGAACCACCTATTGCTCCAGCAATTCCTCAAGCCACACCAACTACCGTGGCTCAACACGCGAATCCAACAAATTCTGGTGATAGCAATTGGGCCTCCTTTGATGTTGAACCTGTGGTAAAAGCATCTCAGGGTCTTTCAAATGTAAATCCGCTTGAATCTATGCTGTCCCAGTTGTCTGTTCCATCATCCTTACCTGCTCACGTTTCCGGAGCCCAAGGGCCTTTGGCAGGATCAGCTCCAGCTGCGAGCAGCTTCACAACTTTCCCAGCCAGTGTTGGTTCATTAACATCTTCTGGATTGACAACGGCATCACCTTTCAGTAATGCAGGCCCTTGGCATAGTTTGCAGTATCAGCAACCACAACCGCAACCACTGTTCACATCTACTGTTGGCCAGCCTACTATTCAACAATCTATCCCACCAGTAAATGGAGCTTTGAATTATCAGGGGCATCCAAGCACCCTAGTGCCAAATGTGTCAAAGGTTGTCAATGAGGAAAAGTATAGTGTTGCTTCACAAACTTCTACTGTAGACATAAAACCGAGTGGAAGAAATGAACTTCCCGAGGATCTATTCACTGTAAAATATTCAGCCTTCCCTGCTCCAATCCCAGGCTGGCAAATGGGTGCACCACCTGGCATGGGTGTCCCAGTTCAATATAATAATGTGATGTCCATACCAAGTTTCCCACAACCATCAAAATCTACAAATCCATTTGATGTGATCAATCAACCAACTCCGGTTCCGGTTCAAGCCCCAACATTTCCTTCTATGTCATCCTTGCAAGGTGCTTTGCCTAGTGTAACACCTTCAGCTACAGCGCACCCTTCAAACATGGTTAATCAATCTCTTGCCTGGAACCCTCCATCCTCATTATCATATGCACCAATGCCGCCTCCACAAGCACATACTTTTGCCTCAGCAATGAGACCTAGGGCATACATGGAACAACAAATGGCCACTAACGTGACAATGCCGAGCCATCAAGGACTTGGGACTTTTGGTACTGAGGGAGGTGCTTTTGGATTCTCTACTATAGATCAGCAGCCGAATGGTAGGTTGCCAGCCCCTGCTACGTTAAACCCCTTCCCTTCAGGGGGTAATCCTTTTGGATGA 2058 0.4504 MTSRFKEDEKNERIIRGLLKLTPNRRCINCNSLGPQYVCTNFWTFVCTSCSGIHREFTHRVKSVSMAKFTAQEVSALQEGGNQHAKEIFFKEWDPQTHSLPDSNNVDRLRDFIKHVYVDKRFTGERSYDKPPKAQGDKDDSYENRRMETYQGGHKSPPYEDTYERRYSDRSSPGGRSPGYDQERHYANDKRSPGRPPIINDWRREDRFGDGRKFEDRRISDGGNKIESQSPERAKDLGSSSPLPVVRPVREILGENVVPLRISEPPKANSGQAANGSGLTQRTASSSSLASSNGTQTEVKLETIRSLIDFDDIPEPPIAPAIPQATPTTVAQHANPTNSGDSNWASFDVEPVVKASQGLSNVNPLESMLSQLSVPSSLPAHVSGAQGPLAGSAPAASSFTTFPASVGSLTSSGLTTASPFSNAGPWHSLQYQQPQPQPLFTSTVGQPTIQQSIPPVNGALNYQGHPSTLVPNVSKVVNEEKYSVASQTSTVDIKPSGRNELPEDLFTVKYSAFPAPIPGWQMGAPPGMGVPVQYNNVMSIPSFPQPSKSTNPFDVINQPTPVPVQAPTFPSMSSLQGALPSVTPSATAHPSNMVNQSLAWNPPSSLSYAPMPPPQAHTFASAMRPRAYMEQQMATNVTMPSHQGLGTFGTEGGAFGFSTIDQQPNGRLPAPATLNPFPSGGNPFG 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03928 685 MobiDBLite consensus disorder prediction 325 345 - -
Vifa6g03928 685 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Vifa6g03928 685 MobiDBLite consensus disorder prediction 262 298 - -
Vifa6g03928 685 MobiDBLite consensus disorder prediction 268 298 - -
Vifa6g03928 685 Gene3D Arf GTPase activating protein 2 131 IPR038508 -
Vifa6g03928 685 Pfam Putative GTPase activating protein for Arf 13 124 IPR001164 GO:0005096
Vifa6g03928 685 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Vifa6g03928 685 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 135 - -
Vifa6g03928 685 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Vifa6g03928 685 MobiDBLite consensus disorder prediction 124 243 - -
Vifa6g03928 685 PANTHER ARFGAP/RECO-RELATED 1 685 IPR044820 GO:0005096
Vifa6g03928 685 MobiDBLite consensus disorder prediction 124 150 - -
Vifa6g03928 685 CDD ArfGap_AGFG 12 122 - -
Vifa6g03928 685 MobiDBLite consensus disorder prediction 314 345 - -
Vifa6g03928 685 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Vifa6g03928 685 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Vifa6g03928 685 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Vifa6g03928 685 MobiDBLite consensus disorder prediction 182 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03928 Vifa-Chr6 1300605191 1300613570 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03928 12 122 C2H2 Transcription Factor Family AT4G05330 35.897 5.00e-12 65.9