Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03925 ATGAAGAAAACAAAAACACAAACAGAAACACTTGTTCTGGTTACAGTGTTTCTAAGTTTAACCTTAAACACACTTTCGCTCTCAACTCTCACAATCAATGACCAAACTCTTACCTTCGAAAATGACCGTCTCAGAAACGCTTACATAGCGTTACAAGCTTGGAAACAAGCCATTCTCTCTGATCCACAGAACTTCACAACCAACTGGGTTGGATCCAATGTATGCAGCTACACAGGCATTTACTGTGCCCAAGCCCTAGACAACCCTCAAATCCGCACAGTCGCTGGCATTGATCTCAACGACGCCGACATTGCCGCTCATTTACCCGATGAGCTTGGCCTATTACAAGATCTGGCACTTTTCCACACGAATTCTAACAGATTATGTGGCACAGTTCCTCACACGTTTGAGAAACTGAAACTTCTATTTGAGTTGGATCTCAGTAACAACAGATTCGCTGGCAAGTTTCCGGAAGTTGTGTTGCGGATTCCAAGCCTTAAATATTTGGATTTAAGGTTCAATGAATTTGAAGGCAATGTTCCCAGGGAGTTGTTTGATTTACAAATAGATGCTCTTTTCATAAATGATAACCGGTTTACGTCGGTGTTACCGGAGAATTTTGGTAACTCTCCGGCGTCTGTTGTTGTTCTGGCCAACAATAAGTTCCATGGGTGTATTCCTTCCAGTATAGGAAACATGTCCAATTTGAATGAAATTAGTTTCATGAACAATTTGTTTAAGTCTTGTTTACCTGATGAGATTGGGATGCTCAAGAATTTGACTGTTTTTGATGTTAGTGTTAATCAGTTTGTGGGGACTTTGCCGGCGGCGATTGGAGGTGCTGTGAGTTTGGAGCAGCTCAATGTGGCGGATAATTTGTTGTGCGGTAAGATTCCGCCGAGTATTTGTATGTTGCCGAATCTGAAGAATTTTACGTTTTCGAATAATTTCTTTACCGGCGAGCCGCCGGCGTGTTTGAGTTTGCCGGCCAGCGATGATAAGAGGAATTGTTTGCCGGCGAGGCCGTTTCAGAAATCGCCGGGAGAATGTGTGGCGTATTTGTCTAAGAAGGTGGATTGTAAGTCGTTTAAGTGTAAGGCGTTTGTTCCTTCTTTTCATTCACCATCGTCACCGTCGCCGGCAGTGTCACCTACCTCACCACCAGCATTGCCGGGAGTGACACCTTCCTCTCCACCACTGCCGGGAACGGCACATTCCCCTCCGCCGTCAATAGTGTCACCAGTTTCTCCACCACTTCCCGGGGTAGCACATTCTCCTCCACCGCCGCCAGGAACAGCACATTCCTCTCCACCACCGGGGCATTCACACTCTTCTCCACCGGGACATTCACCACCTCCATCTACTTCTCCAACAACTCCAGTTGGTTCGCCACCGTCACACACTCCAATGCCGTCATCTCCGCCACTAAATACACCACCAGCGCCTGCTCCTCATTATGGCTCATCGCCGCCACAGGCTCATTCACCTCTACCGTCGCCCTATCCTCCCCATGTCCATTCACCACCACCGGGAATGACACCTTCCTCTCCACCGGAACATTCACAACCTCCATCTACATCTCCAACACCTCCTCTGGAATCACCACCATCTCCACCACTAAATTCACCACCACCTACAGGTTCTCATCATGGCCGATCACCTCATCCTTCCCCTGTTCATTCCACACCACCACATCCACCGGTATATGCTTCTCCACCTCCACCATCTTCTTCATCTTCCACACCACATCCACCGGTATATGCTTCTCCACCTCCACCATCTTCTTCATCTTCCACACCACATCCACCTGTATATGCTTCTCCACCTCCACCACCTTCTTCATCTTCCACACCACATCCACCTGTATATGCTTCTCCACCTCCACCACCTTCTTCATCTTCCACACCACATCCACCTGTATATGCTTCTCCACCTCCACCACCTTCTTCATCTTCCACACCACATCCACCTGTATATGCTTCTCCACCTCCGCCAATTCATCATACTTCTCCATCGCCACCACCTCCTTCCCCTATCCATCACAGTTCGCCGCCTCCACCACCTACCCCTGCATATGGAGGACCTTTGCCACCAATCGTCGGACTCCCATACGCGTCACCTCCACCACCTCCTTACTATTGA 2142 0.4851 MKKTKTQTETLVLVTVFLSLTLNTLSLSTLTINDQTLTFENDRLRNAYIALQAWKQAILSDPQNFTTNWVGSNVCSYTGIYCAQALDNPQIRTVAGIDLNDADIAAHLPDELGLLQDLALFHTNSNRLCGTVPHTFEKLKLLFELDLSNNRFAGKFPEVVLRIPSLKYLDLRFNEFEGNVPRELFDLQIDALFINDNRFTSVLPENFGNSPASVVVLANNKFHGCIPSSIGNMSNLNEISFMNNLFKSCLPDEIGMLKNLTVFDVSVNQFVGTLPAAIGGAVSLEQLNVADNLLCGKIPPSICMLPNLKNFTFSNNFFTGEPPACLSLPASDDKRNCLPARPFQKSPGECVAYLSKKVDCKSFKCKAFVPSFHSPSSPSPAVSPTSPPALPGVTPSSPPLPGTAHSPPPSIVSPVSPPLPGVAHSPPPPPGTAHSSPPPGHSHSSPPGHSPPPSTSPTTPVGSPPSHTPMPSSPPLNTPPAPAPHYGSSPPQAHSPLPSPYPPHVHSPPPGMTPSSPPEHSQPPSTSPTPPLESPPSPPLNSPPPTGSHHGRSPHPSPVHSTPPHPPVYASPPPPSSSSSTPHPPVYASPPPPSSSSSTPHPPVYASPPPPPSSSSTPHPPVYASPPPPPSSSSTPHPPVYASPPPPPSSSSTPHPPVYASPPPPIHHTSPSPPPPSPIHHSSPPPPPTPAYGGPLPPIVGLPYASPPPPPYY 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03925 713 FunFam Leucine-rich repeat extensin-like protein 1 48 209 - -
Vifa6g03925 713 Gene3D Ribonuclease Inhibitor 215 338 IPR032675 -
Vifa6g03925 713 MobiDBLite consensus disorder prediction 380 713 - -
Vifa6g03925 713 Gene3D Ribonuclease Inhibitor 45 214 IPR032675 -
Vifa6g03925 713 SUPERFAMILY L domain-like 48 329 - -
Vifa6g03925 713 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 227 322 - -
Vifa6g03925 713 PRINTS Proline rich extensin signature 375 387 - -
Vifa6g03925 713 PRINTS Proline rich extensin signature 388 409 - -
Vifa6g03925 713 PRINTS Proline rich extensin signature 434 451 - -
Vifa6g03925 713 PRINTS Proline rich extensin signature 453 478 - -
Vifa6g03925 713 PRINTS Proline rich extensin signature 414 430 - -
Vifa6g03925 713 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 32 523 - -
Vifa6g03925 713 MobiDBLite consensus disorder prediction 372 713 - -
Vifa6g03925 713 Pfam Leucine rich repeat N-terminal domain 50 82 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03925 Vifa-Chr6 1299621602 1299623743 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03925 34 365 Leucine-rich Repeat extension Gene Families AT3G24480 71.171 4.18e-176 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03925 - - cam:101504763 583.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03925 6 1299621602 1299623743 Vifa6g03925 6 1299621602 1299623743 ECH