Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03923 ATGACTGAACTCAACTCTAGCAACAACACTTCCTTGCTCAAAATACCAACCATCAAGTATAACAAATTGTTCATCAATGGAGATTTTGTTGATTCTATATCAGGAACAACATTTGAGACAATAGACCCAAGAGCAGGAGAGGTGATTGCAAGAATCAGTGAAGGAGCTAAAGAAGACATTGACATAGCAGTTAAAGCAGCGCGCGAGGCATTCGACTCAGGTCCATGGCCACGAATGTCTGGCGTTGAAAGGGCAAAAATAATGATGAAATTTGCAGAACTAGTTGATGAAAACACAGAAGAACTAGCAGCATTAGATGCAATTGATGCTGGAAAGTTATACTATATTGCAAAGGTTATAGAAATTCCCTCTGCAGCAAATACACTACGTTACTATGCAGGTGCTGCAGATAAAATTCATGGAGAGGTATTGAAATCTTCTGGCCAATTCCATGCTTACACATTAATGGAACCAATTGGAGTTGTGGGACATATCATTCCATGGAATGCTCCTAGTTCACTTTTCTTCACCAAAGTTAGTCCTGCTTTAGCTGCTGGTTGCACCATGGTCCTCAAACCTGCTGAACAAACACCTCTCTCAGCTTTGTTTTATGCTCATCTAGCTAAGCTAGCTGGAATCCCAAATGGAGTGTTGAATGTAGTACCTGGATTTGGACCAACTGCTGGTGCTGCAATTAGCTCACACATGGACATAGATGTGGTTAGCTTTACTGGTTCGGTTGAAGTAGGCCGTGAAATAATGCAAGCTGCAGCTAAGAGTAATTTAAAACATGTTTCACTAGAACTAGGAGGCAAGTCGCCTCTCATTATTTTCGATGATGCTGATGTCGACAAAGCTGCTGAGCTTGCTCTTTTCGGTCTCCTAACTAACAAGGGAGAAGTTTGTGTCGCAAGCTCCCGTGTGTTTGTTCAGGAAGGGATATATGATCAAGTTGAGAAGAAGTTGGTGGAGAAAGCAAAAGCTTGGATCGTTGGGGATCCTTTTGATCCTAAAACTCAACAAGGACCTCAGGCTGATAGGAACCAATTTGAAAAAATTATTTCCTATATTGAGCATGGAAAGAAAGAAGGAGCTACACTCTTGACTGGAGGTAAAGCAGTGGGCAGCCATGGCTACTACATTGAACCTACAATTTTCTCCGATGTAAAGGAGGACATGCTTATAGCAAAGGATGAAATATTTGGCCCTGTGATGGCACTGATGAAGTTTAAGACTATTGAGGAAGCCATTAAGAGTGCTAACAATACCAGATATGGCCTAGCAGCAGGCATTGTGACCAAGAATTTGGATATTGCAAACACTGTGTCAAGGTCCATTCGTGCAGGCGTTATTTGGATCAACTCTTATTTAGCCTTGGGAAGTGACATTCCTTTTGGAGGATATAAAATGAGTGGATTTGGAAGAGATTTGGGATTAGAAGCTCTTCACAAGTACTTACAAGTTAAATCTGTTGTAACACCTATTTACAACTCCCCTTGGCTTTGA 1506 0.4137 MTELNSSNNTSLLKIPTIKYNKLFINGDFVDSISGTTFETIDPRAGEVIARISEGAKEDIDIAVKAAREAFDSGPWPRMSGVERAKIMMKFAELVDENTEELAALDAIDAGKLYYIAKVIEIPSAANTLRYYAGAADKIHGEVLKSSGQFHAYTLMEPIGVVGHIIPWNAPSSLFFTKVSPALAAGCTMVLKPAEQTPLSALFYAHLAKLAGIPNGVLNVVPGFGPTAGAAISSHMDIDVVSFTGSVEVGREIMQAAAKSNLKHVSLELGGKSPLIIFDDADVDKAAELALFGLLTNKGEVCVASSRVFVQEGIYDQVEKKLVEKAKAWIVGDPFDPKTQQGPQADRNQFEKIISYIEHGKKEGATLLTGGKAVGSHGYYIEPTIFSDVKEDMLIAKDEIFGPVMALMKFKTIEEAIKSANNTRYGLAAGIVTKNLDIANTVSRSIRAGVIWINSYLALGSDIPFGGYKMSGFGRDLGLEALHKYLQVKSVVTPIYNSPWL 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03923 501 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 10 491 - -
Vifa6g03923 501 FunFam Aldehyde dehydrogenase, putative 463 489 - -
Vifa6g03923 501 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 271 460 IPR016163 GO:0016620
Vifa6g03923 501 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 267 274 IPR029510 GO:0016491
Vifa6g03923 501 Pfam Aldehyde dehydrogenase family 30 491 IPR015590 GO:0016491
Vifa6g03923 501 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 25 289 - -
Vifa6g03923 501 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 295 306 IPR016160 GO:0016491
Vifa6g03923 501 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 25 489 IPR016162 GO:0016491
Vifa6g03923 501 FunFam Aldehyde dehydrogenase3 271 460 - -
Vifa6g03923 501 SUPERFAMILY ALDH-like 13 497 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03923 Vifa-Chr6 1298935661 1298944745 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03923 3 501 Aldehyde Dehydrogenase Gene Family AT3G24503 69.400 0.0 736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03923 K12355 - gmx:100527654 850.506