Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03921 ATGAGTATTGACCATGCTAATGGAACACTCACCAAGGTCCCTACCATCAAGTTCACCAAACTATTCATCAATGGAGATTTCGTTGAATCACTTTCAGGGAAGAGTTTTGAGACAATAGATCCAAGAACAGGAGATGTTATAGCAAGAATCAGTGAAGGGACCAAAGAAGACATTGATGTTGCTGTAAAGGCAGCACGTCATGCATTTGACTCAGGTCCATGGCCTCGCCTGTCAGGCACTGAAAGAGCAAAAATAATGATGAAATTTGCGAACCTTATTGATGAAAACATACAAGAGCTAGCAGCACTTGATGCCATTGATGCAGGAAAGTTGTACCATATGTGTAAGGCTTTTGAAATTCCCTCTGCAGCAAATACGCTACGTTACTATGCAGGTGCAGCTGATAAAATTCATGGTGAGGTTAGCCCTTGTTTAGCTGCTGGATGCACCATGGTCCTTAAACCTGCCGAACAAACTCCTCTCTCCGCTTTGTTTTATGCTCATCTAGCTAAACTGGCTGGAATCCCGGACGGAGTGTTGAATGTAGTACCCGGATTTGGAGAAATTGCTGGTGCTGCAATTAGCTCACACATGGACATTGATGCGGTAAGCTTTACTGGTTCAACACAAACCGGTCGTAAGATAATGGAAGCTGCAGCAAAGAGTAACTTGAAACAAGTTTCACTTGAATTAGGAGGCAAGTCACCACTCATAATTTTTGATGATGCTGATATTGAAAAAGCTACCGAACTTGCTCTTATAGGCATCTTATTCAACAAGGGAGAAGTGTGTGCTGCAAGTTCCCGCGTGTTTGTTCAAGAAGGAATCTATGAAGAATTCGAGAAAAAATTGGTAGAAAAAGCAAAAGCTTGGGTCGTTGGGGACAATTTTGATCCTAATGTTCAACAAGGACCTCAAGTTGACAAGAAACAATTTGAAAAAATTCTTTCATATATAGAACATGGAAAAAGGGAAGGAGCTACCCTTTTGACTGGTGGTAAAACAGTTGGGAACAAAGGATACTACATTGAGCCAACAATTTTCTCCAATATAAAGGATGATATGCTTATAGCACAGGATGAAATATTTGGTCCTCTGTTGGCGCTGAAAAAGTTCAAGACTATTGAGGAAGCGATTAAGAGTGCTAATAATACAAGATATGGATTAGCGGCCGGTATTGTGACAAAGAATTTGGATATAGCAAACACTGTGTCAAGATCCATTCGCGCAGGCACTATTTGGATAAACTGTTATTTTGCTTTTGGAGATGATATTCCTTTTGGAGGATATAAAATGAGTGGATTTGGAAGAGAATATGGATTGGAAGCAATTCATAAGTATTTACAAGTTAAATCTGTTGTTACTCCCATTTATAATTCTCCATGGCTATGA 1392 0.3994 MSIDHANGTLTKVPTIKFTKLFINGDFVESLSGKSFETIDPRTGDVIARISEGTKEDIDVAVKAARHAFDSGPWPRLSGTERAKIMMKFANLIDENIQELAALDAIDAGKLYHMCKAFEIPSAANTLRYYAGAADKIHGEVSPCLAAGCTMVLKPAEQTPLSALFYAHLAKLAGIPDGVLNVVPGFGEIAGAAISSHMDIDAVSFTGSTQTGRKIMEAAAKSNLKQVSLELGGKSPLIIFDDADIEKATELALIGILFNKGEVCAASSRVFVQEGIYEEFEKKLVEKAKAWVVGDNFDPNVQQGPQVDKKQFEKILSYIEHGKREGATLLTGGKTVGNKGYYIEPTIFSNIKDDMLIAQDEIFGPLLALKKFKTIEEAIKSANNTRYGLAAGIVTKNLDIANTVSRSIRAGTIWINCYFAFGDDIPFGGYKMSGFGREYGLEAIHKYLQVKSVVTPIYNSPWL 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03921 463 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 257 268 IPR016160 GO:0016491
Vifa6g03921 463 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 142 453 IPR016162 GO:0016491
Vifa6g03921 463 FunFam Aldehyde dehydrogenase3 233 422 - -
Vifa6g03921 463 Pfam Aldehyde dehydrogenase family 140 453 IPR015590 GO:0016491
Vifa6g03921 463 FunFam Aldehyde dehydrogenase, putative 425 451 - -
Vifa6g03921 463 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 141 453 - -
Vifa6g03921 463 SUPERFAMILY ALDH-like 12 459 IPR016161 GO:0016491
Vifa6g03921 463 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 11 141 IPR016162 GO:0016491
Vifa6g03921 463 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 229 236 IPR029510 GO:0016491
Vifa6g03921 463 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 235 424 IPR016163 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03921 Vifa-Chr6 1298147836 1298150564 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03921 1 463 Aldehyde Dehydrogenase Gene Family AT3G24503 64.072 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03921 K12355 - gmx:100811540 801.201