Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03908 ATGTCATCATCATTCTCTATCTCTTCTTCACTTCCATCACTTCAAAACCCTAACTTCAATTCCCTCAAATTACCCAATCTCCGTTTCAATTCTAGAATCTCTTCACCACCACGCTCTCGCCCTAACTTCCCCCAACTCTACAAAACATCCACCACTCTTCGCCGTAGATTCCCATGCAATAAAGCCTTGAAAGATTCCGGTGATAATGGTGGCGGTGGTCGAGATGTTGACCAGGAGGCTGAGAAGAAAAATGTGTCGTCTGGACTTTTTCCAGAGTGGTTGAATTTCACTAGTGATGATGCGAAAACGGTTTTTGCTGCTTTGGCGATTTCGCTTGCTTTTCGTACTTTCATTGCTGAGCCGAGGTTCATTCCTTCGTTGTCGATGTATCCTACTTATGATGTTGGAGATAGAATTGTTGCTGAAAAGGTTTCATACTATTTTAGAAAGCCGTGTGCAAATGATATTGTGATTTTTAAAAGCCCTCCAGTCCTTCAAGAAGTTGGATATACTGATGATGATGTTTTCATAAAACGTGTTGTTGCAAAGGAAGGTGATATTGTAGAGGTTCGAAATGGACATGTTGTAGTTAATGGGATTGAAAGGGATGAGAAGTTTATAAATGAAGCGCCGAAATATGAAATGAAACCAATACGTGTTCCAGAAAACTCCGTTTTTGTGATGGGAGACAACCGCAATAACAGCTACGACTCACATGTGTGGGGTCCCCTGCCGGCCAAGAATATCATAGGTAGATCAGTATTCCGCTATTGGCCACCAAATAGAATTGCCGCCACAGTTGCTAAGGGAGGGTGCCCTGCTGAAACCAAGTCGGAGACTACCAGTACTACTCTAGCATCTCAATGA 867 0.4279 MSSSFSISSSLPSLQNPNFNSLKLPNLRFNSRISSPPRSRPNFPQLYKTSTTLRRRFPCNKALKDSGDNGGGGRDVDQEAEKKNVSSGLFPEWLNFTSDDAKTVFAALAISLAFRTFIAEPRFIPSLSMYPTYDVGDRIVAEKVSYYFRKPCANDIVIFKSPPVLQEVGYTDDDVFIKRVVAKEGDIVEVRNGHVVVNGIERDEKFINEAPKYEMKPIRVPENSVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPNRIAATVAKGGCPAETKSETTSTTLASQ 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03908 288 Gene3D Umud Fragment, subunit A 114 270 - -
Vifa6g03908 288 PRINTS Bacterial leader peptidase 1 (S26A) family signature 176 188 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vifa6g03908 288 PRINTS Bacterial leader peptidase 1 (S26A) family signature 117 133 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vifa6g03908 288 PRINTS Bacterial leader peptidase 1 (S26A) family signature 220 239 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vifa6g03908 288 MobiDBLite consensus disorder prediction 58 80 - -
Vifa6g03908 288 FunFam Peptidase/ serine-type peptidase 126 257 - -
Vifa6g03908 288 SUPERFAMILY LexA/Signal peptidase 115 264 IPR036286 -
Vifa6g03908 288 CDD S26_SPase_I 120 252 IPR019533 GO:0004252|GO:0006465
Vifa6g03908 288 Pfam Signal peptidase, peptidase S26 101 258 IPR019533 GO:0004252|GO:0006465
Vifa6g03908 288 ProSitePatterns Signal peptidases I signature 3. 225 238 IPR019758 GO:0004252|GO:0016020
Vifa6g03908 288 PANTHER SIGNAL PEPTIDASE I 88 264 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vifa6g03908 288 NCBIfam signal peptidase I 102 260 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03908 Vifa-Chr6 1293912670 1293915236 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03908 129 259 MADS-box Gene Family AT1G29960 33.333 1.58e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03908 K03100 - gmx:100815810 367.466