LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa6g03908	ATGTCATCATCATTCTCTATCTCTTCTTCACTTCCATCACTTCAAAACCCTAACTTCAATTCCCTCAAATTACCCAATCTCCGTTTCAATTCTAGAATCTCTTCACCACCACGCTCTCGCCCTAACTTCCCCCAACTCTACAAAACATCCACCACTCTTCGCCGTAGATTCCCATGCAATAAAGCCTTGAAAGATTCCGGTGATAATGGTGGCGGTGGTCGAGATGTTGACCAGGAGGCTGAGAAGAAAAATGTGTCGTCTGGACTTTTTCCAGAGTGGTTGAATTTCACTAGTGATGATGCGAAAACGGTTTTTGCTGCTTTGGCGATTTCGCTTGCTTTTCGTACTTTCATTGCTGAGCCGAGGTTCATTCCTTCGTTGTCGATGTATCCTACTTATGATGTTGGAGATAGAATTGTTGCTGAAAAGGTTTCATACTATTTTAGAAAGCCGTGTGCAAATGATATTGTGATTTTTAAAAGCCCTCCAGTCCTTCAAGAAGTTGGATATACTGATGATGATGTTTTCATAAAACGTGTTGTTGCAAAGGAAGGTGATATTGTAGAGGTTCGAAATGGACATGTTGTAGTTAATGGGATTGAAAGGGATGAGAAGTTTATAAATGAAGCGCCGAAATATGAAATGAAACCAATACGTGTTCCAGAAAACTCCGTTTTTGTGATGGGAGACAACCGCAATAACAGCTACGACTCACATGTGTGGGGTCCCCTGCCGGCCAAGAATATCATAGGTAGATCAGTATTCCGCTATTGGCCACCAAATAGAATTGCCGCCACAGTTGCTAAGGGAGGGTGCCCTGCTGAAACCAAGTCGGAGACTACCAGTACTACTCTAGCATCTCAATGA	867	0.4279	MSSSFSISSSLPSLQNPNFNSLKLPNLRFNSRISSPPRSRPNFPQLYKTSTTLRRRFPCNKALKDSGDNGGGGRDVDQEAEKKNVSSGLFPEWLNFTSDDAKTVFAALAISLAFRTFIAEPRFIPSLSMYPTYDVGDRIVAEKVSYYFRKPCANDIVIFKSPPVLQEVGYTDDDVFIKRVVAKEGDIVEVRNGHVVVNGIERDEKFINEAPKYEMKPIRVPENSVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPNRIAATVAKGGCPAETKSETTSTTLASQ	288

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa6g03908	288	Gene3D	Umud Fragment, subunit A	114	270	-	-
	Vifa6g03908	288	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	176	188	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Vifa6g03908	288	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	117	133	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Vifa6g03908	288	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	220	239	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Vifa6g03908	288	MobiDBLite	consensus disorder prediction	58	80	-	-
	Vifa6g03908	288	FunFam	Peptidase/ serine-type peptidase	126	257	-	-
	Vifa6g03908	288	SUPERFAMILY	LexA/Signal peptidase	115	264	IPR036286	-
	Vifa6g03908	288	CDD	S26_SPase_I	120	252	IPR019533	GO:0004252\|GO:0006465
	Vifa6g03908	288	Pfam	Signal peptidase, peptidase S26	101	258	IPR019533	GO:0004252\|GO:0006465
	Vifa6g03908	288	ProSitePatterns	Signal peptidases I signature 3.	225	238	IPR019758	GO:0004252\|GO:0016020

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa6g03908	Vifa-Chr6	1293912670	1293915236	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa6g03908	129	259	MADS-box Gene Family	AT1G29960	33.333	1.58e-12	61.6

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa6g03908	K03100		-	gmx:100815810	367.466

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