Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03907 ATGTCATCATCATTCTCTATCTCTTCTTCACTTCCATCACTTCAAAACCCTAACTTCAATTCCCTCAAATTACCCAATCTCCGTTTCAATTCTAGAATCTCTTCACCACCACGCTCTCGCCCTAACTTCCCCCAACTCTACAAAACATCCACCACTCTTCGCCGTAGATTCCCATGCAATAAAGCCTTGAAAGATTCCGGTGATAATGGTGGCGGTGGTCGAGATGTTGACCAGGAGGCTGAGAAGAAAAATGTGTCGTCTGGACTTTTTCCAGAGTGGTTGAATTTCACTAGTGATGATGCGAAAACGGTTTTTGCTGCTTTGGCGATTTCGCTTGCTTTTCGTACTTTCATTGCTGAGCCGAGGTTCATTCCTTCGTTGTCGATGTATCCTACTTATGATGTTGGAGATAGAATTGTTGCTGAAAAGGTTTCATACTATTTTAGAAAGCCGTGTGCAAATGATATTGTGATTTTTAAAAGCCCTCCAGTCCTTCAAGAAGTTGGATATACTGATGATGATGTTTTCATAAAACGTGTTGTTGCAAAGGAAGGTGATATTGTAGAGGTTCGAAATGGACATGTTGTAGTTAATGGGATTGAAAGGGATGAGAAGTTTATAAATGAAGCGCCGAAATATGAAATGAAACCAATACGTGTTCCAGAAAACTCCGTTTTTGTGATGGGAGACAACCGCAATAACAGCTACGACTCACATGTGGGTCCCCTGCCGGCCAAGAATATCATAGGTAGATCAGTATTCCGCTATTGGCCACCAAATAGAATTGCCGCCACAGTTGCTAAGGGAGGGTGCCCTGCTGAAACCAAGTCGGAGACTACCAGTACTACTCTAGCATCTCAATGA 864 0.4271 MSSSFSISSSLPSLQNPNFNSLKLPNLRFNSRISSPPRSRPNFPQLYKTSTTLRRRFPCNKALKDSGDNGGGGRDVDQEAEKKNVSSGLFPEWLNFTSDDAKTVFAALAISLAFRTFIAEPRFIPSLSMYPTYDVGDRIVAEKVSYYFRKPCANDIVIFKSPPVLQEVGYTDDDVFIKRVVAKEGDIVEVRNGHVVVNGIERDEKFINEAPKYEMKPIRVPENSVFVMGDNRNNSYDSHVGPLPAKNIIGRSVFRYWPPNRIAATVAKGGCPAETKSETTSTTLASQ 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03907 287 PANTHER SIGNAL PEPTIDASE I 88 263 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vifa6g03907 287 Gene3D Umud Fragment, subunit A 114 269 - -
Vifa6g03907 287 MobiDBLite consensus disorder prediction 58 80 - -
Vifa6g03907 287 PRINTS Bacterial leader peptidase 1 (S26A) family signature 176 188 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vifa6g03907 287 PRINTS Bacterial leader peptidase 1 (S26A) family signature 220 239 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vifa6g03907 287 PRINTS Bacterial leader peptidase 1 (S26A) family signature 117 133 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vifa6g03907 287 Pfam Signal peptidase, peptidase S26 101 257 IPR019533 GO:0004252|GO:0006465
Vifa6g03907 287 SUPERFAMILY LexA/Signal peptidase 115 263 IPR036286 -
Vifa6g03907 287 NCBIfam signal peptidase I 102 259 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vifa6g03907 287 ProSitePatterns Signal peptidases I signature 3. 225 238 IPR019758 GO:0004252|GO:0016020
Vifa6g03907 287 CDD S26_SPase_I 120 251 IPR019533 GO:0004252|GO:0006465
Vifa6g03907 287 FunFam Peptidase/ serine-type peptidase 126 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03907 Vifa-Chr6 1293912670 1293915236 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03907 129 258 MADS-box Gene Family AT1G29960 33.333 2.91e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03907 K03100 - gmx:100815810 358.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03907 6 1293912670 1293915236 Vifa6g03907 6 1293912670 1293915236 ECH