Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03895 ATGGGGGAAGGTGAGGGGAGTGATATCCCTCCTAAAAACGTACAGTTTGATTTGGTTTCGGCTTCGAATTCGAAGAAGCTTGCTAGGCAGCTCGATTTCAACACTTTTGGTGGGACTCCGGTAACTGCACCTTTGCCACCTTTGCCGGAACAATCGCAGCCTCCGGTGACACTGCCTCCTCTTCCTTCAGCCAAATTGGGGAAACCAGAATCTCCAAAATCAAAATCAAGACCCAACTCTGAGACAAAAGATGCTACTCCAAAGAAGCAAAAACAGTGCAATTGTAAACATTCAAAATGCTTAAAGCTATATTGTGAATGTTTTGCATCGGGAATATATTGTGATGGTTGCAACTGTGTAAATTGTTTTAACAATGTTGACAATGAAGCTGCTAGACGAGAAGCTGTTGAAGCAACTTTAGAACGCAATCCAAATGCTTTTAGGCCGAAAATTGCTAGCAGCCCTCATGGAACACGTGATAACAGGGAGGAGGCAGGGGAAGTTTTAATATTAGCAAAGCACAACAAGGGGTGCCATTGTAAAAAATCTGGGTGCCTCAAGAAGTACTGTGAATGTTTTCAAGCCAACATTCTTTGTTCTGAAAATTGTAAATGCATGGATTGCAAAAACTTTGAAGGAAGTGAAGAGCGACAAGCTTTGTTCCATGGAGATCAAAACAATAATATGGCATTTATTCAGCAAGCAGCCAATGCTGCCATAACTGGAGCTATTGGCTCCTCTGGTTATTCATCACCGCCAGTATCGAGGAAAAGAAAAGGTTCAGAACTCTGGCCGTCCGTCAAGGATCCATCTGTTAGCAAGCTGGGACAACAGGCAAATGCTGTCAGAGGTCCTGGAGCACCCTCCTCATCCTTGTCTCCTGCCCCAGTTGCTCGTGTTGGACATGCATCATCAGGCCCTTCAAAATTTATGTACAGGTCTCTTTTAGCAGACATCATACAACCACAGCACCTGAAAGAGCTGTGCTCTGTTCTAGTGCTAGTAGCTGGACAAGCCACTAAAACACTTACAGACCAGAAAAATTTAATGGATAAGCACACAGAAGATCGGACAGAAACTTCTCTTGCTTCTTCAAATCAAGAGCAATTGCCAAATCAAAAGGAAGCTGATGTTGAGAAAGCTATGGCTGATGATTGTTCTAGTGCAAATCAAACTGATAAAACCAGTCCGGAAAACTCCAGTTCAGATGGTACTGATGCTTCAAAAGGGAGGCCAATGTCTCCTGGAACTCTAGCATTGATGTGTGATGAGCAAGATACAATGTTCATGACTGCGGCCCCCTCTATTGGGTCAATGCCCCATGCTTGCAACACATCTTCTCAATTGCCTCGTGGACAAGGAGCAACAGAGATCTATGCAGAGCAAGAAAGAATTGTATTGACGAAATTCAGAGATTTTCTTAATAGGGTTATCACTATGGGAGAAATAAATGAAACAAAGTGTTCTTCATTAGCCAGAAGTGAGTCAGAGATTCAAAAGGATCCAATCATCAATAGCACTTTAAATGCCAGGACTGCGGCAGCACATCAGCAGGGACGGGCCACCAGCAACAGTGTTGCCAAAGCTGTCAGCAACCCCACCACTTCAACATCATCTTTGGTCCCTTGTAGTCTTGTTTCGGAAAATGGGGAAATTAAGCCGAAGGTTGAAAAATAG 1677 0.4365 MGEGEGSDIPPKNVQFDLVSASNSKKLARQLDFNTFGGTPVTAPLPPLPEQSQPPVTLPPLPSAKLGKPESPKSKSRPNSETKDATPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCFNNVDNEAARREAVEATLERNPNAFRPKIASSPHGTRDNREEAGEVLILAKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDQNNNMAFIQQAANAAITGAIGSSGYSSPPVSRKRKGSELWPSVKDPSVSKLGQQANAVRGPGAPSSSLSPAPVARVGHASSGPSKFMYRSLLADIIQPQHLKELCSVLVLVAGQATKTLTDQKNLMDKHTEDRTETSLASSNQEQLPNQKEADVEKAMADDCSSANQTDKTSPENSSSDGTDASKGRPMSPGTLALMCDEQDTMFMTAAPSIGSMPHACNTSSQLPRGQGATEIYAEQERIVLTKFRDFLNRVITMGEINETKCSSLARSESEIQKDPIINSTLNARTAAAHQQGRATSNSVAKAVSNPTTSTSSLVPCSLVSENGEIKPKVEK 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03895 558 SMART CXC_2 173 214 IPR033467 -
Vifa6g03895 558 SMART CXC_2 88 128 IPR033467 -
Vifa6g03895 558 MobiDBLite consensus disorder prediction 35 88 - -
Vifa6g03895 558 MobiDBLite consensus disorder prediction 42 66 - -
Vifa6g03895 558 MobiDBLite consensus disorder prediction 70 88 - -
Vifa6g03895 558 MobiDBLite consensus disorder prediction 346 418 - -
Vifa6g03895 558 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 90 125 IPR005172 -
Vifa6g03895 558 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 176 210 IPR005172 -
Vifa6g03895 558 MobiDBLite consensus disorder prediction 517 541 - -
Vifa6g03895 558 ProSiteProfiles CRC domain profile. 89 213 IPR005172 -
Vifa6g03895 558 MobiDBLite consensus disorder prediction 271 287 - -
Vifa6g03895 558 PANTHER TESMIN/TSO1-RELATED 43 483 IPR028307 -
Vifa6g03895 558 MobiDBLite consensus disorder prediction 247 304 - -
Vifa6g03895 558 MobiDBLite consensus disorder prediction 385 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03895 Vifa-Chr6 1290343853 1290348663 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03895 1 505 CPP Transcription Factor Family AT4G29000 57.118 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vifa6g03895 TCR 2.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03895 - - psat:127100492 997.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03895 6 1290343853 1290348663 Vifa6g03895 6 1290343853 1290348663 ECH