Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03894 ATGGGGACGGAGCGTCCACCCAAGAGTTGGAGCATCCACACCCGATCGGAGATAATCGCCAACTACAAAGTCATGGAACGCATCGGCTCCGGCTCTTACGCCGACGTCTACCGCGGCCGTCGTCTCTCCGACGACCTAACCGTCGCTCTCAAGGAAATCCACGACTACCAGTCCGCTTTCCGAGAAATCGAAGCGCTGCAGATGCTTCAAGGCTCTCAGAACGTCATCGTCATGCATGAGTACTTCTGGCGTGAAGATGAAGACGCGGTTCTTGTTCTCGAGTATCTCGTCACCGATTTGGCTACGGTTATTTCAAATGCTGCTAAGGAAGGTTTTCCGCTACCTGTTGGTGAGATGAAACGGTGGATGGTTCAGATTCTTTCTGGTCTGGATGCGTGTCATCGGAATATGATTGTTCATCGTGATTTGAAACCTGCTAATCTCTTGATTTCTGATAGTGGTGTTCTTAAATTGGCTGATTTTGGACAGGCCAGGATACTCACAGAACCTGGATTTGATGCTTTTGAAGGGAATCATCCACCGAGTGAGCATGATGGTTCTAATCATGAAAGTTCACTTCATCATCCTGAAGTTTTCCCTCTCACCGACAACTTAAGTCAATTTGGATGTGGAAATCAAGAGCAGGGAAGCAGTCATAATGAGTATTTTAGTGTTTTAGATGAGCTGAAAACAAAGAGATTTGTGGATGACATTGAAAAGGATTCAAGCATTCCAGACGGAAATACTTCTTGTCTTGCAACGTGCACAACAAGTGATATGGATAATGATCCTATGAGAACTTCTTTTAGTTATGAAGCAATGGAGCAGGAAGATAAAGAACATGGTGGTTTAACATCATGTGTTGGAAGTCGTTGGTTCCGGGCTCCTGAGTTGCTTTACGGATCCATAAACTATGGTTTAGAAATTGATCTCTGGTCACTTGGCTGTATTTTTGCAGAGCTCGTGACTCTGAAACCCTTGTTTCCTGGAACGGCTGATATTGACCAGCTCAGCAAAATTATTAATGTTTTGGGCAACCTTGATGAGAGAGCTTGGCCTGGCTGCTCAGAACTTCCTGATTACAGAATAATCTCGTTTAGCAAGGTAGAAAACCCTCCTGGTGTTGAATCCTGCCTGCCCAACCGCTCAGCCGATGAAGTATCTCTTGTCAAAAACCTGGTTTGTTATGATCCGGCTAGGAGGGCTACAGCAATGGAGCTACTCCAGGACAAGTACTTTAACGAAGAACCTCTTCCTGTTCCCATTTCTGAGTTGCGAGTTCCTCTGACTAGAAATACAGAAGATGAGGATTCTATTGGTGGGTGGCAGGATTACAATGACATGGGTTCTGATTCTGATTTCGATGACTTTGGCCCTATGAATTTCACCAGAACTGACACCGGTTTCTCCATACAGTTTCCTTGA 1425 0.4533 MGTERPPKSWSIHTRSEIIANYKVMERIGSGSYADVYRGRRLSDDLTVALKEIHDYQSAFREIEALQMLQGSQNVIVMHEYFWREDEDAVLVLEYLVTDLATVISNAAKEGFPLPVGEMKRWMVQILSGLDACHRNMIVHRDLKPANLLISDSGVLKLADFGQARILTEPGFDAFEGNHPPSEHDGSNHESSLHHPEVFPLTDNLSQFGCGNQEQGSSHNEYFSVLDELKTKRFVDDIEKDSSIPDGNTSCLATCTTSDMDNDPMRTSFSYEAMEQEDKEHGGLTSCVGSRWFRAPELLYGSINYGLEIDLWSLGCIFAELVTLKPLFPGTADIDQLSKIINVLGNLDERAWPGCSELPDYRIISFSKVENPPGVESCLPNRSADEVSLVKNLVCYDPARRATAMELLQDKYFNEEPLPVPISELRVPLTRNTEDEDSIGGWQDYNDMGSDSDFDDFGPMNFTRTDTGFSIQFP 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03894 474 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Vifa6g03894 474 Pfam Protein kinase domain 22 171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g03894 474 Pfam Protein kinase domain 279 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g03894 474 FunFam Cyclin-dependent kinase F-1 13 107 - -
Vifa6g03894 474 MobiDBLite consensus disorder prediction 173 193 - -
Vifa6g03894 474 MobiDBLite consensus disorder prediction 178 192 - -
Vifa6g03894 474 PANTHER CELL DIVISION PROTEIN KINASE 21 419 - -
Vifa6g03894 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Vifa6g03894 474 Gene3D Transferase(Phosphotransferase) domain 1 248 427 - -
Vifa6g03894 474 SUPERFAMILY Protein kinase-like (PK-like) 9 432 IPR011009 -
Vifa6g03894 474 SMART serkin_6 22 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g03894 474 Gene3D Transferase(Phosphotransferase) domain 1 14 203 - -
Vifa6g03894 474 ProSiteProfiles Protein kinase domain profile. 22 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03894 Vifa-Chr6 1290133257 1290136552 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03894 4 474 Core Cell Cycle Gene Families AT4G28980 61.925 0.0 603
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Vifa6g03894 Pkinase 3.2e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03894 - - ahf:112726382 695.656