Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03892 ATGAACACCGTAACCGTCACAACAAAAGCTCACATCCTCCGCTATATAACCGCATTCGTCACCGGAGTAATTCATCAATCAGAACTCCGGCGTCACCTGATTGAAACTCTCCACCGCGAAACTCATGTAAATCAAGTAAATATAAAACAACTGAACCTCGCCGCAGACGCTCTCGAAAGCGCCGTTTCATCGTCCAGTTCCTCCATTCGATCCTCGTCTCTCTCCCTCGCAGAGAAGCTTCTCCTTCCTCTCACTGATTATACTCTCTCTTCTTTCATTCTCTCCCTCATTCTTATCCTCCGTAACCGCTCTGACGAATCCGCTATCAGTCTCCTCCGAATCTTTCATTCTAATCCTTCCCTCGCTCGATCTGAAATAGCACCATCTCTCTACGAGCGCCTATTTTATATCCATCTCTTTCCTGTTTTCCGATGGTTCGATGATCAGAGAACACTGATTTTACCATCCACTTGTGAAACCACAAGCCGCGATATGAGTGACTACTCCGACGAGTTAGTGGCTATGCCTTACGCGAAGTTGTTGTCTAATGTGAGCGGTGAACAAGCCTCGAAGCTGAGGGAGTTGGAAAGAGAGTACGAAGAGGTTCTAGATGAGAACTGTAGGGTTCTTGCTCTGTACTTTAAAGAGGTTTTGATGAATAAAGATGAAGATGCGGTGGTTACTCCGCCTTTGCTGATATTGAAGAGTGCTGCAGGAGATGGCAATGGTGGTGGTGGAGAGCACAGAATGGAAGAAATGCAAATGCCTGAGTTGGAGAACGGACGGTATAATCCAATGTGGTCCGAAAGGGATACGTCTATTGAATTATTGAGCAGCAATTCCAGCAGTAGGTCCTCCCAGGCACCATTATATCCTCAAAGAGTCTCTCCCAGAGTCCTCAATCCCCCGCAATCTTCAAAATATTGGACAACGCCAGTCTATTTAAACTCGGCCCCTGAAACTCAATATTCTTTAGATGAAAATTCACTTTGTTCTTCTTCAGATTCTGAAGCTGAAAATGAGGAAAAAGACAAAAATATTGCATTGTTGGAGCCTCAACAAAGCCAAACCCAGGAACAAATGTTAGCCATCTTGAAAGAATCCATGGGCTCCCCCGATAATCCAATGGCAGAATACGAAAACACGCTGCTGAATGGAAGTGGGAAACAAACGCCTCCGAAAGACTTTGTCTGTCCAATAACCAGTAACATATTTGATGATCCTGTGACTCTTGAGACTGGTCAGACATATGAACGGAAAGCTATTGAGGAATGGTTCAATAGAGAGAACATAACTTGTCCTATCACTCGCCAGAAGCTGCAAAATACCAAGCTACCTAAAACAAATTATGTGCTCAAAAGACTAGTTGCCAGCTGGAAAGAATGCAACCCAAGTTCAGTCCTGCCAACATGTGAGAGTCCATTCAAAGATAACGAGGAAGAAGTAAAGACAACTATGCCTTCAGCTTCTCCTAATTGCGTCATAATACAAGCCACCGTTGATGGGATGATTAGTGAACTACGCTGTGCAATCAATAACCTGTACATGTCAGAGATTCTCCAGGAATCTGAAATGGCAGTTCTTCAAATTGAGAAGTTGTGGAGAGGAGGGAATATGGGACTGGATATCCATAGCATGCTATCAAAACCTCCAATAATTAACGGGTTTATGGAGATACTTTTCAATTCTCTTGAACCCCAGGTCCTACAGGCAACAGTTTTTCTTCTGGCCGAGATGGGGTCTAGAGATAATGTTGTTATTCAGACTCTCACACGTGTGGATACCGACGTTGAATGTATAATGGCTCTTTTTAAGAAAGGGTTGACAGAGGCTGTTGTGCTATTATATGTCCTAAACCCTTCCACTGTGACTCTTACCGAGATGGCCATAGTGGAGTCCCTCATAGCAGTTTTCATTAAGAAAGAGGAAGACTTAGTTAAGATGTGCTTAAGTCCAAGAACAGCTGCGGTTCTTCTACTGGCACAGGTTATGGGAGGCAGCGATGAGATAATTGCGTCTTCGATTGTCAAAGCTATGTTCTCTGAGAAAGCAATTGAAGCTGTTGTTGGAAGTTTGGGAGCTGAATGGGCAGAGGAGAGGGTTGCTGCAGTGGAGATCTTATTGAGATGCATGCAAGAGGATGGAACTTGCAGGAACACCATTGCAGATAAAGCAGAGCTGTCTCCTATTCTTGAAAGCTTCATCAGTGCAACAGATGCAGAGCGTTTCAAGATTGTTGAATTTTTTTCTGAGTTGATCAAACTAAATAGGAGAACATTCAATGAACGAATCCTCCACATTATTAAGGAAGAAGGACCTTTTAGTACAATGCACACTCTTCTTATTTATTTGCAGACAGCCCTTCAAGATCAAAGGCCAGTCATGGCCAGTCTTTTACTCCAACTTGATCTTCTGGTTGAACCGAGAATGATGAGCATATACCGTGAAGAGGCGATAGATACTCTTATTTCATGCCTGGGGAACTCAGATTTCCCTACTACCCAGTTGGCAGCTGCTGATACAATCATGTCACTGCAGGGGAGGTTCAACTCCTTCGGAAAGCCCCTTATCAGAGAAGTCCTTCTTAAACGTGCAGGAATTGACAAAAGTCCTAGAAGTGCTGTACAGGAGGATCATATCAGCAACTTCTTCTCAGATATTGAAACAATTCCAGAAGAAGAGAAGGCAGCAGATGATTGGGAAAGAAAAATTGCGTCTGTTCTAGTTAGCCACGAGTTTGGTATACTTTTTGAAGCTTTGGCAGATGGCATGAAGAGCAGAATTCCAGAACTGCGTTCAGCATGCTTTATATCCGCTACTTGGCTCGTAAACATGCTAACCATTCTACCAGATACAGGGATACAAGGAGCAGCCCGTGTCTGTCTGCTAAAGCAGTTTGTAAATAAATTAAATTCTGCCAAGGACATAGAGAACCGAATCCTTTCTATGCTTGCTCTCAACAGCTTTCTTCATTTTTCTGATGGCATACGTGATCTAACTGCTTCCTACGCTAAGGATATCTTAAAAGGTTTGAGAGAGCTAAAGAGATTTTCTCCCTTGGCATCTGAAATGCTCAACGTTTTGGTTGATGAGAATCAGTCTAATACAGACATTTGGAGACATAAAGAGCTAATTCAAGTAGATTGCAGAGATAATGGAGAAGTGTTGTCAGTCATTTGGTTCAAGGATAAAATTATTTCAGGCCATACAGATGGAAGAATCAAGGTCTGGACGTTAAAAGATAACTTGTTACTTCTGTTGCAAGAGATCCAAGAACATACTAAGGCTGTGACAAGCTTGACAATTTCAGAATCTGGTGACCGACTTTACAGTGGTTCACTTGACCGAACTGCAAAGATCTGGTCTATTGGAAAGGAAGCAATACATTGTGAGCAGGTGCAAGATATGAAGGACCAGATTCATAATTTAGTTGTAACGAATAGCACAACTTGTTTCATTCCACAGGGGGCTGGTATCAAGGTTCAGTCATTGAATGGTGAATCCAAATTGTTAAATTCTAATAAATATGTGAAGTGTTTGGCTCATGCTCATGGAAGATTATACTGTGGATGCCATGACAGTAGTGTTCAGGAGATACATTTGGCCACTGGAACTATCACTAATATTCAAAGTGGTTCTAAAAGATTACTTGGGAAATCCAATCCTATTCATACTTTGAAAATTCATGGTGAACTTATATATGCAGCTGGCTCTTCCTTGGACGGAACTGCTATAAAGATATGGAACAATTCCAATTACAGCATGGTTGGATCACTGCAAACTGGATCAGAAGTGAGGGCTATGGCAGTGAGTTCAGACTTAATTTATTTGGGGTGCAAGGGAGGTGTTGTAGAAATTTGGGATAAAAAGAAACACAATAGAGTTGACACGTTACAGTTGGGTACAAATTGTAAGGTTAATTGCATGACTCTAGACAGCAACGAAGAGATTTTGGTAATTGGAACTTCAGATGGCCAAATTCAGGCTTGGGAAATGACTTAA 4002 0.423 MNTVTVTTKAHILRYITAFVTGVIHQSELRRHLIETLHRETHVNQVNIKQLNLAADALESAVSSSSSSIRSSSLSLAEKLLLPLTDYTLSSFILSLILILRNRSDESAISLLRIFHSNPSLARSEIAPSLYERLFYIHLFPVFRWFDDQRTLILPSTCETTSRDMSDYSDELVAMPYAKLLSNVSGEQASKLRELEREYEEVLDENCRVLALYFKEVLMNKDEDAVVTPPLLILKSAAGDGNGGGGEHRMEEMQMPELENGRYNPMWSERDTSIELLSSNSSSRSSQAPLYPQRVSPRVLNPPQSSKYWTTPVYLNSAPETQYSLDENSLCSSSDSEAENEEKDKNIALLEPQQSQTQEQMLAILKESMGSPDNPMAEYENTLLNGSGKQTPPKDFVCPITSNIFDDPVTLETGQTYERKAIEEWFNRENITCPITRQKLQNTKLPKTNYVLKRLVASWKECNPSSVLPTCESPFKDNEEEVKTTMPSASPNCVIIQATVDGMISELRCAINNLYMSEILQESEMAVLQIEKLWRGGNMGLDIHSMLSKPPIINGFMEILFNSLEPQVLQATVFLLAEMGSRDNVVIQTLTRVDTDVECIMALFKKGLTEAVVLLYVLNPSTVTLTEMAIVESLIAVFIKKEEDLVKMCLSPRTAAVLLLAQVMGGSDEIIASSIVKAMFSEKAIEAVVGSLGAEWAEERVAAVEILLRCMQEDGTCRNTIADKAELSPILESFISATDAERFKIVEFFSELIKLNRRTFNERILHIIKEEGPFSTMHTLLIYLQTALQDQRPVMASLLLQLDLLVEPRMMSIYREEAIDTLISCLGNSDFPTTQLAAADTIMSLQGRFNSFGKPLIREVLLKRAGIDKSPRSAVQEDHISNFFSDIETIPEEEKAADDWERKIASVLVSHEFGILFEALADGMKSRIPELRSACFISATWLVNMLTILPDTGIQGAARVCLLKQFVNKLNSAKDIENRILSMLALNSFLHFSDGIRDLTASYAKDILKGLRELKRFSPLASEMLNVLVDENQSNTDIWRHKELIQVDCRDNGEVLSVIWFKDKIISGHTDGRIKVWTLKDNLLLLLQEIQEHTKAVTSLTISESGDRLYSGSLDRTAKIWSIGKEAIHCEQVQDMKDQIHNLVVTNSTTCFIPQGAGIKVQSLNGESKLLNSNKYVKCLAHAHGRLYCGCHDSSVQEIHLATGTITNIQSGSKRLLGKSNPIHTLKIHGELIYAAGSSLDGTAIKIWNNSNYSMVGSLQTGSEVRAMAVSSDLIYLGCKGGVVEIWDKKKHNRVDTLQLGTNCKVNCMTLDSNEEILVIGTSDGQIQAWEMT 1333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03892 1333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 378 468 IPR013083 -
Vifa6g03892 1333 Gene3D - 1158 1333 IPR015943 GO:0005515
Vifa6g03892 1333 ProSiteProfiles Trp-Asp (WD) repeats profile. 1090 1123 IPR001680 GO:0005515
Vifa6g03892 1333 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1090 1123 - -
Vifa6g03892 1333 Pfam U-box domain 393 462 IPR003613 GO:0004842|GO:0016567
Vifa6g03892 1333 ProSitePatterns Trp-Asp (WD) repeats signature. 1318 1332 IPR019775 -
Vifa6g03892 1333 SMART Ubox_2 395 459 IPR003613 GO:0004842|GO:0016567
Vifa6g03892 1333 ProSiteProfiles Trp-Asp (WD) repeats profile. 1299 1333 IPR001680 GO:0005515
Vifa6g03892 1333 Gene3D - 1037 1157 IPR015943 GO:0005515
Vifa6g03892 1333 MobiDBLite consensus disorder prediction 277 303 - -
Vifa6g03892 1333 SMART WD40_4 1291 1331 IPR001680 GO:0005515
Vifa6g03892 1333 SMART WD40_4 1041 1078 IPR001680 GO:0005515
Vifa6g03892 1333 SMART WD40_4 1252 1288 IPR001680 GO:0005515
Vifa6g03892 1333 SMART WD40_4 1209 1249 IPR001680 GO:0005515
Vifa6g03892 1333 SMART WD40_4 1083 1122 IPR001680 GO:0005515
Vifa6g03892 1333 SUPERFAMILY ARM repeat 514 1094 IPR016024 -
Vifa6g03892 1333 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1299 1333 - -
Vifa6g03892 1333 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 1332 - -
Vifa6g03892 1333 SUPERFAMILY WD40 repeat-like 1061 1332 IPR036322 GO:0005515
Vifa6g03892 1333 Pfam WD domain, G-beta repeat 1088 1122 IPR001680 GO:0005515
Vifa6g03892 1333 ProSiteProfiles U-box domain profile. 391 466 IPR003613 GO:0004842|GO:0016567
Vifa6g03892 1333 SUPERFAMILY RING/U-box 390 462 - -
Vifa6g03892 1333 CDD RING-Ubox_PUB 393 445 IPR045210 -
Vifa6g03892 1333 Coils Coil 185 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03892 Vifa-Chr6 1289451104 1289457485 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03892 387 459 U-box Gene Family AT1G23030 49.315 4.42e-16 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03892 - - gmx:100808867 1936.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03892 6 1289451104 1289457485 Vifa6g03892 6 1289451104 1289457485 ECH