Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03890 ATGAATAGAAGTGTTCATCTTCAAACCTCACCAGTGCAACAACAAATGATGGCTGGAAACCCTAACAACTGGTGGAACCCTCCTGCACCTGATCATCTTCCACCTCCTTCCAATTACTTTCTAACTCCATATCCTTCTTCATCTTCTCTTCCTCTTCCTCTTCCTCTTCCTTCTTGGCATGAAAATCAACAACTTCCTGATAACTCATGGACTCAACTACTCATGAGCGGCGGCGTGGTGTATGAAGAAGATAAAGAACAAGTTATGCTACCTCAGCCTCCTCTAAATGCTTCTTCTCTTGTTGATCATGTAAAACATGAAAGCTCAGTGAACAACTATGTGTATGGAAATGAAGAATTTCATGGAACAACAAATTCTACTTGGTCTCAAATAGTGTCGGTGCCTTCTTCTTCTTCCTCCAAATCCAGCATGTTGGATTTCTCTAACAGTACAAGATCTCCATCCTCAGATCCATCTTCTGATCAGTGTAATAGTGGTGCAGCTGGTGGGGCAATGAAGAAAGCTAGGGTTCAACCATCTACAACTCAGTCTACCTTCAAGGTTAGGAAGGAGAAGTTAGGTGATAGAATTACAGCCCTTCATCAACTTGTTTCTCCATTTGGAAAGACTGACACAGCATCTGTCTTATTAGAATCTATTGGTTATATAAGATTCCTTCATAGTCAAATTGAGGCACTAAGTTTACCATACTTGGGAAATGGATCACCAAACATTATCAATATCCAACAACAACAATCTGTCCAAGGTGAGAAAAGTTGTTTCTTCCCTGAACATCCTGGTCAGCTGCTGAATGAAAATTGTTTGAAAAGAAAGGTTGAGGGTTTTGAGGAAGAAGAAGAAAAGAAGGATTTGAGGAGTAGAGGACTATGTTTGGTTCCAGTTTCATGCACAGTGCAAGTTGGAAGTGAAAATGGAGCTGATTATTGGGCACCTGCTTTTGGTGCTGGATTTCAGTAG 978 0.408 MNRSVHLQTSPVQQQMMAGNPNNWWNPPAPDHLPPPSNYFLTPYPSSSSLPLPLPLPSWHENQQLPDNSWTQLLMSGGVVYEEDKEQVMLPQPPLNASSLVDHVKHESSVNNYVYGNEEFHGTTNSTWSQIVSVPSSSSSKSSMLDFSNSTRSPSSDPSSDQCNSGAAGGAMKKARVQPSTTQSTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLESIGYIRFLHSQIEALSLPYLGNGSPNIINIQQQQSVQGEKSCFFPEHPGQLLNENCLKRKVEGFEEEEEKKDLRSRGLCLVPVSCTVQVGSENGADYWAPAFGAGFQ 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03890 325 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 64 307 - -
Vifa6g03890 325 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 187 237 IPR036638 GO:0046983
Vifa6g03890 325 CDD bHLH_AtbHLH_like 185 234 IPR045239 -
Vifa6g03890 325 MobiDBLite consensus disorder prediction 138 166 - -
Vifa6g03890 325 Gene3D - 183 236 IPR036638 GO:0046983
Vifa6g03890 325 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 226 IPR011598 GO:0046983
Vifa6g03890 325 FunFam Transcription factor bHLH123 family 187 252 - -
Vifa6g03890 325 MobiDBLite consensus disorder prediction 138 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03890 Vifa-Chr6 1288416486 1288419594 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03890 1 269 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 38.482 9.20e-46 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03890 - - psat:127105731 514.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03890 6 1288416486 1288419594 Vifa6g03890 6 1288416486 1288419594 ECH