Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03883 ATGTCTGTGCCGGTAGAACAAGGCTATGGTGGTGGTGAGGTTCCTTTAATGGAAGCCACTGAGAGGAACATTGGATTGAACCTCAAAGCTACTGAACTGAGGCTTGGGTTGCCTGGCTCTGAATCACCAGAGAGAGAAAATGGTGGGTTGTCCATGCTCAAGTGTTTGGTGTCTGGAGCTAAAAGGGGTTTCTCTGATGCTATAGATGGAGGTTCTGGTTCTGGGAAATGGGTTGTCTCTGGAAATGGTGGATCTGAAGTGGGGTTGTGTAAAGATGGAAACTTGTTTTCTCCTAAAGGTAAAGTTTCTGGTGTTGGTGGTGAATGTAACAAACAACAGAATCTTTTCTCTGCAACAGTTGTTAAGGAAACTGTTCCTCACTCTCCTAAGACCTTGCATGAGAATAAACCACATATTTCTCCTCTTTCTGCTAAGGCGCAGGTTGTAGGATGGCCACCAATCCGATCTTTCAGGAAGAACTCAATGGTTTCTCCGCCTCAAAAGAATGATGCTGATGCAGAAACTAAGTCTGAATGCCTTTATGTAAAAGTTAGCATGGAAGGTGCTCCATACTTGCGGAAAGTGGATCTGAATGGTTTTAGCTCTTACAGGGAACTTTCTTCCGCACTCGAAAAGATGTTCAGTTGTTTTACAATCAGTCAATGCGGCTCGTACGGTGTTTCTTGTCAAGAAAAAACTTTAAGTGAGAGTAGATTGGTGGATCTTCTTCATGGTTCAGAATATGTGCTAACCTATGAAGACAAGGATGGTGATTGGATGCTCGTCGGTGATGTTCCATGGGAGATGTTCACTGAGTCTTGCAAGAGGCTGAGGATAATGAAGAGTTCTGAAGCAATCGGGTTAGCACCTCGAGCTATGGAAAAGTGCAAAAGTCGCAACTAG 903 0.4408 MSVPVEQGYGGGEVPLMEATERNIGLNLKATELRLGLPGSESPERENGGLSMLKCLVSGAKRGFSDAIDGGSGSGKWVVSGNGGSEVGLCKDGNLFSPKGKVSGVGGECNKQQNLFSATVVKETVPHSPKTLHENKPHISPLSAKAQVVGWPPIRSFRKNSMVSPPQKNDADAETKSECLYVKVSMEGAPYLRKVDLNGFSSYRELSSALEKMFSCFTISQCGSYGVSCQEKTLSESRLVDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCKRLRIMKSSEAIGLAPRAMEKCKSRN 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03883 300 Coils Coil 293 300 - -
Vifa6g03883 300 SUPERFAMILY CAD & PB1 domains 176 281 - -
Vifa6g03883 300 FunFam Auxin-responsive protein 174 292 - -
Vifa6g03883 300 ProSiteProfiles PB1 domain profile. 179 282 IPR000270 GO:0005515
Vifa6g03883 300 Pfam AUX/IAA family 31 291 IPR033389 -
Vifa6g03883 300 Gene3D - 173 294 - -
Vifa6g03883 300 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 26 287 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03883 Vifa-Chr6 1285229755 1285231568 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03883 182 290 B3 DNA Binding Superfamily AT4G23980 30.275 4.43e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vifa6g03883 AUX_IAA 2.6e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03883 K14484 - gmx:100803754 415.231