Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03878 ATGGAGCGTATCGTTGGCGGCAACTACAAGCTCAACCGCAAGATCGGAAGTGGATCGTTCGGTGAAATCTACATCGCTACGCATATTGATACCTTTGAAATTGTCGCTATCAAGATCGAGAATAGTAAAACAAAGCATCCGCAACTACTTTTCGAGGCAAAGCTCTACAATGTTCTTCAAGGAGGAAGTGGCATTCCAAGCATAAAATGGTATGGTGTAGACGGGGAGGATAATGTACTTGCCATTGATTTACTTGGCCCTAGTCTTGAAGATCTTTTTGTATATTGTGGAAGGAAGTTTTCATTGAAGACTGTGTTATTGTTAGCTGATCAAATGATTACTAGAATAGAATATGTGCACTCTAAAGGATATTTGCATAGGGATATTAAACCCGATAACTTCCTCATGGGACTTGGTCGGAAAGCTAACCAGGTTTACGTAATTGACTTTGGGCTGGCAAAACGGTATCGGCACTCCACAAGCAATCGCCACATCCCTTACAGGGAGAACAAAAATTTAACAGGGACTGCTAGATATGCAAGTTGCAATACTCATCTTGGGATTGAGCAAAGTAGACGGGATGATTTGGAATCTCTAGGATATGTACTTCTGTACTTCCTTAGGGAAAGCCTTCCTTGGCAAGGTCTAAAGGCTTCAACAAAGAAACAGAAGTATGATAAGATATGCCAGAAGAAAGTATCAACTCCTATTGAGGTACTATGCAAATCTCATCCCGTAGAGTTTGCTTCATACTTCCATTACTGCCACTCTTTGACGTTTGATCAACGGCCTGATTATGGATTCTTGAAGCGCCTATTTAGAGACCTATATGCTCGGGAAGGTTATGAGTTTGATTTCGTTTTTGATTGGAGCATTTTAAAGTATCAGCAATCACAGAAGCATAGAGTGTCACCTTCCTTAGCTCCAGTTCCCGGGGCTAGTAACAATCGTGCAGTCCCAATGGATGTTGACAACCATCAAGGGCACGGTGAAGAGCGAATTAAATCAGGAAATGCTACTGGTTCTGGTGTTAAAGTTCAGTTTAAATCACCAACTGGTAGAAACTTGAGTTCTGATAACCCTCTTGACAAGAATATTTTTGCAGAAGCAAATATGCCCTCTACTTCGCATTCTCCTGCTGGTACTTCAAAAAGGAACCCCTTGAAGCCTGCCTTGTCTGCCGAACCTTCCAACCCTGGACATGGGCAAGGAAGTAAAATCAGCCCTTCAAGTAGCTGGATGTCATCTCTGCAGCGCATATCTTCTTCCAAATGA 1275 0.4227 MERIVGGNYKLNRKIGSGSFGEIYIATHIDTFEIVAIKIENSKTKHPQLLFEAKLYNVLQGGSGIPSIKWYGVDGEDNVLAIDLLGPSLEDLFVYCGRKFSLKTVLLLADQMITRIEYVHSKGYLHRDIKPDNFLMGLGRKANQVYVIDFGLAKRYRHSTSNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRESLPWQGLKASTKKQKYDKICQKKVSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLYAREGYEFDFVFDWSILKYQQSQKHRVSPSLAPVPGASNNRAVPMDVDNHQGHGEERIKSGNATGSGVKVQFKSPTGRNLSSDNPLDKNIFAEANMPSTSHSPAGTSKRNPLKPALSAEPSNPGHGQGSKISPSSSWMSSLQRISSSK 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03878 424 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g03878 424 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g03878 424 MobiDBLite consensus disorder prediction 303 424 - -
Vifa6g03878 424 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Vifa6g03878 424 Gene3D Transferase(Phosphotransferase) domain 1 1 332 - -
Vifa6g03878 424 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vifa6g03878 424 PANTHER CASEIN KINASE-RELATED 9 352 - -
Vifa6g03878 424 MobiDBLite consensus disorder prediction 340 383 - -
Vifa6g03878 424 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g03878 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vifa6g03878 424 FunFam Casein kinase I isoform delta-like 1 340 - -
Vifa6g03878 424 MobiDBLite consensus disorder prediction 398 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03878 Vifa-Chr6 1284303737 1284307370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03878 91 267 MAP Kinase Kinase Kinase AT1G62400 29.834 7.99e-12 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vifa6g03878 Pkinase 2.8e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03878 K08960 - gmx:100800342 756.903