Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03876 ATGGCTTCTTCAATTCGACCTACTCTTTCCCTCTTCAATCGCTCTCCTCGTCTCTCTTTCTCCCATTTTTCAACCGCTGTAGTTCCACAATCCAGGAGTTTTGGGTTGAAAGCGTGTAGAATGTTGAGAAAAAGTGGAAACTCCGTTAGAGTTATGGCATCTGGGAACGTGCCTTCATCACTCACTGATGCTTCACAAGAAAATCTACTGGAATGGGTCAAACAAGATAAAAGAAGAATGCTTCATGTTGTTTATCGTGTTGGCGACTTGGATAGAACCATTAAATTCTATACTGAGTGCCTCGGAATGAAGCTCCTTAGAAAGCGCGATATACCCGAGGAGAAATATACTAATGCTTTTCTTGGATATGGACCTGAAGACTCACACTTTGTTATTGAACTCACTTACAATTACGGAGTTGAGAAGTATGATATTGGTACTGGATTTGGCCATTTTGGTATTGCTGTTGATGATATTACAAAAACAGTGGAACTAATAAGAGCTAAGGGGGGCAAAATATCTAGAGAACCTGGTCCTGTCAAAGGAGGCAAAACAGTAATTGCATTTATTGAGGATCCTGATGGTTACAAATTTGAACTTTTGGAAAGAGGCCCCACTCCTGAGCCATTGTGCCAAGTGATGCTTCGAGTGGGTGATCTTAACCGTTCAATCGAGTTTTATGAGAAGGCTTTTGGTATGGAGCTGCTTCGAACACGAGATAATCCAGAGAACAAGTATACCATAGCAATGCTGGGTTATGGTCCAGAAGATAAAACTACTGTTCTGGAGTTGACATACAATTATGGAGTCACGGAATATGATAAAGGAAATGCTTATGCTCAGATTGCAATAGGTACAGATGATGTGTACAAAACTGCCGAAGCGATTAAACTATCCACTGGAAAGGTTACTCGGGAACCTGGACCATTGCCTGGTATCAACACAAAAATTACTGCATGCTTGGATCCCGATGGATGGAAGACGGTATTTGTAGATAATATTGATTTTCTTAAGGAGTTGGAGTAG 1026 0.4103 MASSIRPTLSLFNRSPRLSFSHFSTAVVPQSRSFGLKACRMLRKSGNSVRVMASGNVPSSLTDASQENLLEWVKQDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVEKYDIGTGFGHFGIAVDDITKTVELIRAKGGKISREPGPVKGGKTVIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLNRSIEFYEKAFGMELLRTRDNPENKYTIAMLGYGPEDKTTVLELTYNYGVTEYDKGNAYAQIAIGTDDVYKTAEAIKLSTGKVTREPGPLPGINTKITACLDPDGWKTVFVDNIDFLKELE 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03876 341 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 78 208 IPR029068 -
Vifa6g03876 341 ProSitePatterns Glyoxalase I signature 1. 82 103 IPR018146 GO:0004462|GO:0046872
Vifa6g03876 341 Gene3D - 206 341 IPR029068 -
Vifa6g03876 341 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 79 203 IPR037523 -
Vifa6g03876 341 FunFam Lactoylglutathione lyase 76 205 - -
Vifa6g03876 341 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 210 333 IPR029068 -
Vifa6g03876 341 FunFam Lactoylglutathione lyase 206 341 - -
Vifa6g03876 341 NCBIfam lactoylglutathione lyase 79 204 IPR004361 GO:0004462|GO:0046872
Vifa6g03876 341 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 212 327 IPR004360 -
Vifa6g03876 341 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 80 200 IPR004360 -
Vifa6g03876 341 ProSitePatterns Glyoxalase I signature 1. 212 233 IPR018146 GO:0004462|GO:0046872
Vifa6g03876 341 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 209 333 IPR037523 -
Vifa6g03876 341 CDD GlxI_Ni 80 201 - -
Vifa6g03876 341 Gene3D - 52 204 IPR029068 -
Vifa6g03876 341 PANTHER LACTOYLGLUTATHIONE LYASE 61 341 - -
Vifa6g03876 341 ProSitePatterns Glyoxalase I signature 2. 146 158 IPR018146 GO:0004462|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03876 Vifa-Chr6 1283852046 1283856146 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03876 212 330 Calmodulin-binding Proteins AT1G08110 27.586 3.46e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03876 K01759 - gmx:100775714 606.29