Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03864 ATGGGAGAGTTAGAGTTACCTCAACCTATCTCAAACAAAACATCCTCTACTACTACTACTACTACGGAGTCCGGTTTACCCGACCCGGTTCAAAACCGGTCCAAACGGCCCAGAGATAGTACCAACACCAACCACCCGGTTTACAGAGGCGTCCGGATGCGGGCATGGGGAAAATGGGTATCCGAAATCCGCGAGCCGCGAAAAAAGAATCGGATCTGGCTCGGCACCTTCGCCACGGCGGAAATGGCGGCTCGAGCTCACGACGTGGCTGCTCTCGCCATCAAAGGAAACTCAGCCATCCTCAACTTCCCTGAACTCGCGGATTCAATGCCTCGACCTGAATCGAAATCTCCTCGAGATGTTCAGGCCGCCGCCGTGAAAGCCGCTGCCATGGAAGTTATCAATCAACAAACAACATCTCAATCACATACATCCTCTTTATCTTCGTCTTCATCTTCCTCTTCTCTGTCGCAATCTTCTTCGTCGTCTTCTTTTGCGGTTTCTTCTTCCGAAGAACCGTCAACACCAGACGAACTCGGTGAGATTGTGGAACTACCGGCATTGGGAACGAGTTTTGAATTACCCGACCCGGTTAATATGGTTTTTTCCGACCCGGTTGATGGATGGCCTTATTATTCACACAGTTGGGATCAGATTTCAATGCATCAAGACAACTCTGAAAGTATAAGCATGATTCTTCGGGGTTTTGAGGGTTCATTATGGCAGCATTAA 732 0.4932 MGELELPQPISNKTSSTTTTTTESGLPDPVQNRSKRPRDSTNTNHPVYRGVRMRAWGKWVSEIREPRKKNRIWLGTFATAEMAARAHDVAALAIKGNSAILNFPELADSMPRPESKSPRDVQAAAVKAAAMEVINQQTTSQSHTSSLSSSSSSSSLSQSSSSSSFAVSSSEEPSTPDELGEIVELPALGTSFELPDPVNMVFSDPVDGWPYYSHSWDQISMHQDNSESISMILRGFEGSLWQH 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03864 243 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 31 191 - -
Vifa6g03864 243 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Vifa6g03864 243 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Vifa6g03864 243 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Vifa6g03864 243 FunFam Ethylene-responsive transcription factor 2 46 105 - -
Vifa6g03864 243 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700|GO:0006355
Vifa6g03864 243 MobiDBLite consensus disorder prediction 135 177 - -
Vifa6g03864 243 Pfam AP2 domain 46 96 IPR001471 GO:0003700|GO:0006355
Vifa6g03864 243 CDD AP2 48 106 IPR001471 GO:0003700|GO:0006355
Vifa6g03864 243 MobiDBLite consensus disorder prediction 1 48 - -
Vifa6g03864 243 MobiDBLite consensus disorder prediction 135 175 - -
Vifa6g03864 243 MobiDBLite consensus disorder prediction 8 29 - -
Vifa6g03864 243 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Vifa6g03864 243 SUPERFAMILY DNA-binding domain 47 105 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03864 Vifa-Chr6 1280850045 1280850776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03864 31 225 AP2-EREBP Transcription Factor Family AT5G11590 58.291 1.82e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa6g03864 AP2 7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03864 K09286 - gmx:100778201 254.603